Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18700 701 / 0 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G45810 650 / 0 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT1G29230 644 / 0 ATCIPK18, ATWL1, CIPK18, SnRK3.20 SNF1-RELATED PROTEIN KINASE 3.20, WPL4-LIKE 1, CBL-interacting protein kinase 18 (.1) AT2G34180 590 / 0 ATWL2, CIPK13, SnRK3.7 SNF1-RELATED PROTEIN KINASE 3.7, WPL4-LIKE 2, CBL-interacting protein kinase 13 (.1) AT5G45820 481 / 2e-167 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G58380 473 / 5e-164 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT4G30960 459 / 7e-159 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT1G30270 459 / 2e-158 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G07070 450 / 4e-155 CIPK2, SnRK3.2 SNF1-RELATED PROTEIN KINASE 3.2, CBL-interacting protein kinase 2 (.1) AT5G01810 438 / 5e-151 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007284 [exp] 687 / 0 AT4G18700 684 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10029232 [exp] 501 / 6e-178 AT4G18700 466 / 3e-165 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10021852 [exp] 494 / 1e-172 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 491 / 1e-171 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10042229 [exp] 477 / 9e-166 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10007283 [exp] 474 / 9e-165 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10022749 [exp] 470 / 3e-163 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 463 / 3e-160 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10028115 [exp] 457 / 4e-158 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G067600 [exp] 706 / 0 AT4G18700 720 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.004G058300 [exp] 699 / 0 AT4G18700 735 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.011G067500 [exp] 506 / 3e-177 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.016G133500 [exp] 500 / 1e-174 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.006G186200 [exp] 492 / 5e-172 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.013G156000 [exp] 488 / 2e-170 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.018G108500 [exp] 484 / 7e-169 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.019G048800 [exp] 483 / 1e-168 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G127500 [exp] 483 / 6e-168 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.006G062800 [exp] 459 / 1e-158 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10015275 pacid=23178759 polypeptide=Lus10015275 locus=Lus10015275.g ID=Lus10015275.BGIv1.0 annot-version=v1.0 ATGGCGGCGGAGCCCACCGATTCGCCGACGACTTCCAGCACGGATTCGCCGACGACTTCCAGCAACGGCGCAGCAGCAACGACGTCAACCGCCGCTGGAG GAGGCGCCACCACCACCACCAACCAGCCGTTGCTTCTAGGCCGGTACGAGGTGGGCAAGCTGCTCGGCCATGGCACCTTCGCCAAGGTCTACCACGCTCG GAACGTGAAGACGAACGAGAATGTTGCGATCAAGGTGATCGACAAGGAGAAGATAATGAAAGGCGGGCTCATCGTCCACATCAAGCGCGAAATCTCAAAC CTCCGCCGCGTCCGCCACCCGAATATCGTACACCTATTCGAGGTAATGGCGACCAAGGCCAAGATTTACTTTGTAATGGAGTATGTCCGGGGAGGCGAGC TTTTCAACAAGGTCGCCAAGGGGCGATTGAAAGAGGACGCCGCCCGCCGATATTTCCAGCAGCTGATCTCCGCCGTCGCCTTCTGCCACGCCCGCGGCGT TTTCCACCGCGATCTGAAGCCGGAGAATCTGTTATTGGACGAGGAAGGCAACCTTAAGGTCTCCGATTTCGGACTCAGCGCCGTCGCCGATCAGATCCGT CAGGATGGGTTATTCCACACGTTCTGTGGGACTCCGGCGTATGTAGCACCGGAGGTGCTAGGGAGGAAAGGATACGACGCTGCTAAGGTAGATATCTGGT CCTGTGGCGTAATCCTGTTTGTTTTGATGGCTGGATATTTACCTTTCCATGATCAGAACATTATGTTGATGTATAAGAAGATCTACAAGGGCGAATTTCG TTGCCCTAGATGGTTTTCCCCTGAATTAGCTAAGCTTTTAGTAAAGCTTCTCGACACGAATCCTGCAACTCGAATCACGATTGCTGAAGTTATGGAGAAT CGATGGTTCAAGAGAGGGTTTAAGCACATCAAATTCTACATCGAGGATGATAGAGTGTACAATGTGGTTGACGAATTGAATCAGGAACAGGACGATGCTA GCTCCTGCTGCTCGGAATCTTCAATGTCCGAGTCTGATTCAGAAGTGGAAGCTCGAAGAACAACACGAGCTCCTGGTTCATTGCCTAGGCCGGCGAGTTT GAATGCTTTCGATATAATCTCGTTCTCACCAGGGTTCGACTTGTCCGGATTGTTCGAGGAAGGTAGTAGCGGGGAAGGGACGAGGTTTGTGACAGGGGCT CCTGTGTCAAAGATCATTTCGAAATTGGAGGAGATTGCTAATTTGGTGAGGTTTACAGTCAGGAAGAAGGATTACAGAGTGAGCTTGGAAGGGTCGAGGG AAGGCGTGAAGGGGCCATTGACGATTGCAGCTGAGATATTCGAGCTTACACCGAAGCTTGTGGTCGTTGAAGTGAAGAAGAAGAGTGGGGATAAGGGGGA GTATGAAGAGTTCTGTGAGAAGGAATTGAAACCCGGGTTGCAGAAACTGATGCTGGAGGAATCCGAAGCTGCTGCCTCGAAGAAGAAGGATGATCCGATC TTCGATTCGCCTCGATTGTCTACTGATTCTTTGCTGTCTATCGAATAA
AA sequence Show only first row Show all	>Lus10015275 pacid=23178759 polypeptide=Lus10015275 locus=Lus10015275.g ID=Lus10015275.BGIv1.0 annot-version=v1.0 MAAEPTDSPTTSSTDSPTTSSNGAAATTSTAAGGGATTTTNQPLLLGRYEVGKLLGHGTFAKVYHARNVKTNENVAIKVIDKEKIMKGGLIVHIKREISN LRRVRHPNIVHLFEVMATKAKIYFVMEYVRGGELFNKVAKGRLKEDAARRYFQQLISAVAFCHARGVFHRDLKPENLLLDEEGNLKVSDFGLSAVADQIR QDGLFHTFCGTPAYVAPEVLGRKGYDAAKVDIWSCGVILFVLMAGYLPFHDQNIMLMYKKIYKGEFRCPRWFSPELAKLLVKLLDTNPATRITIAEVMEN RWFKRGFKHIKFYIEDDRVYNVVDELNQEQDDASSCCSESSMSESDSEVEARRTTRAPGSLPRPASLNAFDIISFSPGFDLSGLFEEGSSGEGTRFVTGA PVSKIISKLEEIANLVRFTVRKKDYRVSLEGSREGVKGPLTIAAEIFELTPKLVVVEVKKKSGDKGEYEEFCEKELKPGLQKLMLEESEAAASKKKDDPI FDSPRLSTDSLLSIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10015275 [exp]	0	1
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039621 [exp]	1.4	0.9147
AT3G23600			alpha/beta-Hydrolases superfam...		Lus10035767 [exp]	1.4	0.9129
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Lus10005073 [exp]	3.0	0.9022
AT2G01620		MEE11	maternal effect embryo arrest ...		Lus10013466 [exp]	3.5	0.9017
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10040102 [exp]	4.6	0.8580
AT3G22550			Protein of unknown function (D...		Lus10006102 [exp]	4.7	0.8569
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10017651 [exp]	4.9	0.8910
AT1G27190			Leucine-rich repeat protein ki...		Lus10013288 [exp]	5.1	0.8760
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10012655 [exp]	6.0	0.8761
AT4G38220		AQI	aquaporin interactor, Peptidas...		Lus10026565 [exp]	6.3	0.8784

Compare expression of checked genes

Lus10015275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.