Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18690 194 / 6e-61 unknown protein AT5G45830 177 / 3e-54 ATDOG1, GSQ5, DOG1 GLUCOSE SENSING QTL 5, delay of germination 1 (.1) AT4G18680 174 / 8e-54 unknown protein AT4G18660 119 / 4e-33 unknown protein AT3G14880 92 / 7e-22 unknown protein AT4G18650 79 / 2e-17 transcription factor-related (.1) AT1G58330 76 / 2e-16 ZW2 transcription factor-related (.1) AT1G09950 72 / 1e-14 RAS1 RESPONSE TO ABA AND SALT 1 (.1) AT5G06950 49 / 1e-06 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT3G12250 47 / 4e-06 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025399 [exp] 164 / 9e-51 AT4G18690 94 / 3e-24 unknown protein Lus10042453 [exp] 124 / 1e-33 AT3G14880 145 / 3e-42 unknown protein Lus10039193 [exp] 122 / 4e-33 AT3G14880 135 / 5e-39 unknown protein Lus10013746 [exp] 118 / 1e-31 AT3G14880 141 / 5e-41 unknown protein Lus10039196 [exp] 117 / 3e-31 AT3G14880 135 / 1e-38 unknown protein Lus10013711 [exp] 107 / 1e-27 AT3G14880 251 / 2e-84 unknown protein Lus10028231 [exp] 85 / 2e-19 AT1G58330 154 / 8e-47 transcription factor-related (.1) Lus10025398 [exp] 80 / 9e-19 ND 45 / 2e-06 Lus10029229 [exp] 76 / 8e-16 AT4G18650 207 / 2e-67 transcription factor-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G098800 [exp] 141 / 2e-40 AT3G14880 159 / 6e-48 unknown protein Potri.001G390100 [exp] 102 / 5e-26 AT3G14880 255 / 3e-86 unknown protein Potri.004G058200 [exp] 101 / 1e-25 AT4G18650 226 / 1e-74 transcription factor-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015276 pacid=23178802 polypeptide=Lus10015276 locus=Lus10015276.g ID=Lus10015276.BGIv1.0 annot-version=v1.0 ATGGAGGGTAACCAATCGAGAAGATGCTTCTTCGACTGGATGAATTTGCAACAACTCGACCTAGCCGAGTTGCTCCAGGCCCTCTCCCTACAAAAATCCA ATCCCCATCCACGTCATCATCATCATCACGACGATGACGTGGTGGGGCCCGTGCTGGCCGAGCTGGCACAGAAGATCGTCGGCCACTTCCAGGACTACGC CGACAGGCGCGCGAGCCTCGCGCAAAACGACGACGTTTCGTCCTTCTTCGCGCCTTCTTGGAACTCCCCGCTCGAGAACTCGCTCCTCTGGCTCGCAGGG TGCCGCCCTTCCATGTTCATCCGCTTGCTCTACGCCCTGTGTGGGTCCCAGCTCGACCAATCTATGTTCTCGGCCGGGGCAGACGACGAAGAGAGTAATA GTGTTTGTACTGCGGTGGCTAGCGGTAATCTAGGGGACTTGTCGTGGAGGCAGATGAATTTGGTGAATGAATTGCACCTGAAGACGGTGAGGGAGGAGGA ACGACTTACTAGCCGGCTGGCTAGCTTGCAGGAGGATGTAGGCGACAACCCGATCTGTCGGTTTGTAGCGACGACCAGCAGCTGCAGCGGGAACGAGAGG GACGGAGAAGTCGAAAAGGCGTTAGAGGAGCACGACAGGGGTATGGTAAGCATACTTATGGAGGCAGATAAGCTGAGGCTAAGCACGCTTAAGGAGGTGA TTAACGTGTTAACCCCGGTTCAAGCAGTTGATTATCTTGCTACTGGTAAAAAGCTTCACCTTAATGTTCACCAGTGGGGTAAACAGAGGATCAACCGTGG AGCTAGTTGTAGTGCTAGTTCTACTACTTTGGCAAACTAA
AA sequence Show only first row Show all	>Lus10015276 pacid=23178802 polypeptide=Lus10015276 locus=Lus10015276.g ID=Lus10015276.BGIv1.0 annot-version=v1.0 MEGNQSRRCFFDWMNLQQLDLAELLQALSLQKSNPHPRHHHHHDDDVVGPVLAELAQKIVGHFQDYADRRASLAQNDDVSSFFAPSWNSPLENSLLWLAG CRPSMFIRLLYALCGSQLDQSMFSAGADDEESNSVCTAVASGNLGDLSWRQMNLVNELHLKTVREEERLTSRLASLQEDVGDNPICRFVATTSSCSGNER DGEVEKALEEHDRGMVSILMEADKLRLSTLKEVINVLTPVQAVDYLATGKKLHLNVHQWGKQRINRGASCSASSTTLAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18690			unknown protein		Lus10015276 [exp]	0	1
AT4G14103			F-box/RNI-like superfamily pro...		Lus10017218 [exp]	1.4	0.8005
AT5G45360			F-box family protein (.1)		Lus10007767 [exp]	4.0	0.7960
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10012000 [exp]	11.7	0.7000
AT3G52180		ATSEX4, SEX4, A...	STARCH-EXCESS 4, DUAL-SPECIFIC...		Lus10038652 [exp]	13.4	0.7725
AT4G13540			unknown protein		Lus10023697 [exp]	17.9	0.7450
AT1G70820			phosphoglucomutase, putative /...		Lus10009327 [exp]	24.7	0.7708
AT1G19670		CORI1, ATHCOR1,...	CORONATINE-INDUCED PROTEIN 1, ...		Lus10004076 [exp]	27.1	0.7669
AT4G04330		AtRbcX1	homologue of cyanobacterial Rb...		Lus10011972 [exp]	35.5	0.7664
AT2G33030		AtRLP25	receptor like protein 25 (.1)		Lus10003462 [exp]	39.4	0.6992
AT5G52780			Protein of unknown function (D...		Lus10038849 [exp]	58.8	0.7292

Compare expression of checked genes

Lus10015276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.