Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45840 520 / 1e-177 Leucine-rich repeat protein kinase family protein (.1.2) AT4G18640 439 / 6e-146 MRH1 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) AT2G40270 327 / 3e-105 Protein kinase family protein (.1.2) AT3G56050 317 / 4e-101 Protein kinase family protein (.1.2) AT5G58540 287 / 1e-91 Protein kinase superfamily protein (.1.2.3) AT5G07150 288 / 2e-89 Leucine-rich repeat protein kinase family protein (.1) AT5G41180 235 / 2e-68 leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G63430 228 / 6e-66 Leucine-rich repeat protein kinase family protein (.1.2) AT5G02800 142 / 5e-37 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT1G67720 145 / 3e-36 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025400 [exp] 1089 / 0 AT5G45840 608 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10029228 [exp] 479 / 5e-165 AT5G45840 444 / 5e-151 Leucine-rich repeat protein kinase family protein (.1.2) Lus10007281 [exp] 458 / 2e-152 AT5G45840 568 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031290 [exp] 389 / 1e-126 AT4G18640 457 / 7e-153 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Lus10031860 [exp] 377 / 2e-122 AT5G45840 491 / 4e-166 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017439 [exp] 336 / 3e-106 AT5G45840 457 / 1e-152 Leucine-rich repeat protein kinase family protein (.1.2) Lus10007516 [exp] 332 / 6e-105 AT5G45840 463 / 4e-155 Leucine-rich repeat protein kinase family protein (.1.2) Lus10008486 [exp] 274 / 1e-82 AT1G63430 878 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10001489 [exp] 273 / 1e-82 AT1G63430 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G058100 [exp] 568 / 0 AT4G18640 694 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.011G067400 [exp] 537 / 0 AT4G18640 678 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.008G072100 [exp] 416 / 2e-137 AT2G40270 451 / 2e-153 Protein kinase family protein (.1.2) Potri.009G075400 [exp] 376 / 3e-121 AT2G40270 449 / 9e-152 Protein kinase family protein (.1.2) Potri.001G280200 [exp] 373 / 4e-120 AT2G40270 430 / 2e-144 Protein kinase family protein (.1.2) Potri.010G185300 [exp] 343 / 3e-109 AT2G40270 434 / 1e-146 Protein kinase family protein (.1.2) Potri.003G124800 [exp] 271 / 9e-82 AT1G63430 858 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G106600 [exp] 271 / 9e-82 AT1G63430 839 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G025700 [exp] 162 / 1e-43 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.005G036600 [exp] 156 / 1e-41 AT1G54820 434 / 4e-150 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10015277 pacid=23178780 polypeptide=Lus10015277 locus=Lus10015277.g ID=Lus10015277.BGIv1.0 annot-version=v1.0 ATGGAGGGGAGATCATCGTCGTCATGGAACAACATTGGAACACAATTTATGTGCTTCTTGGTTTTCATGGTTGGTTTTAAAATTCGGGGCTCTTGGTCAC TTAATGATGAAGGTGGCATGTTCGAAGTGAGGTCTGATCCGTACGATGTTTTAGCTAATTGGAACCTTCGCGACGAAGATCCTTGTTTGTGGTATGGAGT TCGATGTGTTGCCGGCAAAGTGCAAATACTATTATTGCGCGGCAATTGTTTCTATGGTGTTCTTCCAATAGAGATTGTCAATCTTAAGAAGCTTGAGATA CTAGACGTTAGAGATAATGATTTCAGTGGCACGATCCCGACAGAAATCGGGAGACTACAAACGTTGAAGTGCTTGTGGGTGAGTGGCAATAAATTTGAAG GAATTATTCCAGGAGAAATGAGGAGGCTTAAACTACTATCCCATTTGGAACTTGATGGTACCCTTGTATCTACTTCATTCACAGGATTCAACGATGCAAA CCGCATGTCCGAAAACGCATTATGGACGAAAAGACTAAAACATCCGAGGAAAGAAGCGACATTGCGTAGAAGGCTTCAAGAACAACAACTATTACAACAA CAAGCTAGCAACCTTGCAGCTTTGCCTCCTAGCAACACCCCAACCTCACCGGACATGATAAGCTTCGTTCCGATCACAACAGGAAGTGGCGCTTTCCCAG CAATACCGGATTCGAAATCGCCACCTAACACCGATGCTTCCTCACAAGACGAAGATGGGCCTGGTGATCATGACCAGGAACCGGCTAAAAAGGGGCCAAT TGAACACAACCATGGACCATGGGATGCTTGGTGGTACTTCTTCCTGGCTCTAATGGTGGTTTTCTTATTGGCTTTGATGGTGGTTCTTCTAATTTTGTGT CGTAGACGAAGCGGGAAGATCATTACCCCTTGGAAGACCGGGATCAGCGGGCAGCTGCAGAAGGCTTTTGTTTCAGGAGGGGTTCCGAAATTAAATAGGC CAGAGTTGGAAACTGCTTGTGAAGAGTTTAGCAATATAATACTACAATTCGACGGTGGCACAGTGTACAAGGGGACATTGTCTAGCGGAATTGAGATCGC TGTCGTTTCGACGACTACAACTTCTCTCAAAAATTGGTCAAAGACTGCAGAGAAGGCATATCGTAAACAGATTGATACATTGTCAAGAGTCAACCACAAG AACTTTGTAAACCTTATCGGCTTCTGCGAGGAAAATGAACCATTCACTCGGGTCATGGTGTTCGAATACGCCCCAAACGGATCGCTCTTCGAACATATTC ACGATAAACATATGGAACATCTTGATTGGACAACTCGAATGCGAATCATCATGGGCGTGGCGTACTGCTTGAAACATATGCATCACGATACGAATCCCCC TGTATCTCACACGTATTTGACTTCGCGAAAAGTGTACTTATCCGACGACTATGCAGCTAAGATTGTGGAAGTTCCGTTTCTGCCACACCATGCATCGAAA GCGAACCCGAACGTAGATGATCAAGATGATGGTACAGAGTTGCCTGCAATCGTTGACCCTGAAACTAACGTGTACAGCTTTGGTGTAATAGTGTTGGAAG TCCTAACTGGGAAGCCACCTTACTCAGAAAAAGATGGCCCCATAGAGAAATGGGCAGCCAAGTATCTAGAAGACAAGAGTAAGCTTTCGGAGATGGCGGA CCCATCACTGAAAGCAAACTTCAAGATCAAAGATTTCGAAGTATTGTGTGAGGTAGCTCAAGAATGCGTAAAGCCGGATCCAAGGCAGAGACCTCCGATG AAGGACATCGTTCCTAGATTACGAGAAGTCATCGGTATCACATTTGAGCAAGCAGTGCCTAGGTTGTCTCCATTGTGGTGGGCGGAACTCGAGCTGTTAG AAGACTCTTGA
AA sequence Show only first row Show all	>Lus10015277 pacid=23178780 polypeptide=Lus10015277 locus=Lus10015277.g ID=Lus10015277.BGIv1.0 annot-version=v1.0 MEGRSSSSWNNIGTQFMCFLVFMVGFKIRGSWSLNDEGGMFEVRSDPYDVLANWNLRDEDPCLWYGVRCVAGKVQILLLRGNCFYGVLPIEIVNLKKLEI LDVRDNDFSGTIPTEIGRLQTLKCLWVSGNKFEGIIPGEMRRLKLLSHLELDGTLVSTSFTGFNDANRMSENALWTKRLKHPRKEATLRRRLQEQQLLQQ QASNLAALPPSNTPTSPDMISFVPITTGSGAFPAIPDSKSPPNTDASSQDEDGPGDHDQEPAKKGPIEHNHGPWDAWWYFFLALMVVFLLALMVVLLILC RRRSGKIITPWKTGISGQLQKAFVSGGVPKLNRPELETACEEFSNIILQFDGGTVYKGTLSSGIEIAVVSTTTTSLKNWSKTAEKAYRKQIDTLSRVNHK NFVNLIGFCEENEPFTRVMVFEYAPNGSLFEHIHDKHMEHLDWTTRMRIIMGVAYCLKHMHHDTNPPVSHTYLTSRKVYLSDDYAAKIVEVPFLPHHASK ANPNVDDQDDGTELPAIVDPETNVYSFGVIVLEVLTGKPPYSEKDGPIEKWAAKYLEDKSKLSEMADPSLKANFKIKDFEVLCEVAQECVKPDPRQRPPM KDIVPRLREVIGITFEQAVPRLSPLWWAELELLEDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45840			Leucine-rich repeat protein ki...		Lus10015277 [exp]	0	1
AT3G03430			Calcium-binding EF-hand family...		Lus10033587 [exp]	1.4	0.9647
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10030097 [exp]	2.2	0.9745
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10018390 [exp]	5.9	0.9423
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10031548 [exp]	6.2	0.9631
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10001395 [exp]	6.4	0.8629
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Lus10004313 [exp]	7.3	0.9292
AT2G34440	MADS	AGL29	AGAMOUS-like 29 (.1)		Lus10016563 [exp]	8.2	0.7988
AT4G02300			Plant invertase/pectin methyle...		Lus10001466 [exp]	8.7	0.9545
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Lus10026355 [exp]	9.4	0.8571
AT1G17930			Aminotransferase-like, plant m...		Lus10004818 [exp]	9.5	0.7569

Compare expression of checked genes

Lus10015277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.