Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29240 82 / 4e-16 Protein of unknown function (DUF688) (.1) AT5G45850 56 / 6e-08 Protein of unknown function (DUF688) (.1) AT4G18630 50 / 3e-06 Protein of unknown function (DUF688) (.1) AT2G34170 46 / 7e-05 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025403 [exp] 686 / 0 AT4G18630 167 / 9e-45 Protein of unknown function (DUF688) (.1) Lus10007276 [exp] 326 / 5e-104 AT1G29240 167 / 5e-45 Protein of unknown function (DUF688) (.1) Lus10029223 [exp] 322 / 1e-101 AT1G29240 168 / 5e-45 Protein of unknown function (DUF688) (.1) Lus10025405 [exp] 56 / 6e-10 ND 40 / 1e-05
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G057800 [exp] 105 / 3e-23 AT1G29240 206 / 1e-57 Protein of unknown function (DUF688) (.1) Potri.011G067000 [exp] 97 / 1e-20 AT1G29240 156 / 2e-40 Protein of unknown function (DUF688) (.1) Potri.014G142800 [exp] 59 / 1e-08 AT2G30990 252 / 8e-75 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05097 [flax] [poplar] DUF688 Protein of unknown function (DUF688)
Representative CDS sequence Show only first row Show all	>Lus10015280 pacid=23178820 polypeptide=Lus10015280 locus=Lus10015280.g ID=Lus10015280.BGIv1.0 annot-version=v1.0 ATGGAGGAGAGGAAGCTGAATCTCAACGCGCCGCTTCTGTCTGTGAGGCGATTCTCTTCTCCAATCCGAGCTACCAGAGATTCGAAGACTCATCATGATC AGGAGGATGATTCCAAGCTTGTTCTTCACAGGCGATACTCTCTTCCATGTCTGGATCAGAAGCAGCAGCAGCAGGTTACGGAGCCTGTGGCGGTTCCTTT CCATTGGGAGCAAATCCCAGGGAGGAGAAAGGATAACGATGGAGGTAATAGTAGTGGTTCTTCGAGGTTTCCTATTAGATGGGTTCCAAGCATTGTGAAG AATCAGGAGGTTAAAACTACCTCTGAAGTTAAAAGCTTGGTCGTTGGTAGAGTGAAATCACAAGGTAATGATGATGTAGATGATGATGATGATGACAAGT TCTCCGATGCGCTTGAATCCTTATCTGCTATGGATTCCTGCTCTATGAAATGCAGCTCGAGTGGTATGAGCAGTTCTTCCAATTGCTTGCATTCGGGGAA TTTCGAAACTGATCCGAAGACTCGAGATTTCATGATGAGTCGGTTCTTGCCTGCTGCAAAGGCGATGACTCTGGATCAGCAGCCTCAGTACTCTGCAAAG AAGCAGCAGCAGCAACAACAATCGAGGCCGATTGTTGTTGTTCGCCGACTCGAGTCTGCCGCTGCTATTGTTCCTTACTGCCATCCCAAGGAAGAGAGTG CAGAAGAAGACTGTGATGATGATGAATATGAAGAAGAGTCTGTGAGTTTACCAATGAAAGGTTGTGGGTTATTCTTGCCTCGTTTGTGCTTTAAAAACTC GATTTGCCTCTTCAGTCCTGTTCCTGGGATGAAAGTTAAAAGCTTGAATTCGTTCTCTTCTTCCTCAACTGGCAAAGCCAGCAAGCCTAGTAAGGCTGCG TCTAGTAGTTCATCCAGCAGCCCAAGTGCCAGAAAGAGCTCTAAGGATGATACAAGTAAACAAAGGCCAAGCAGAGGAGTTCAATCTCCTAGGACGATGG AGGTTGTTGAGAACAATAAGCTAGTCGGCGGATCTGACAGCTTTAGTGAAAGGCAAATGAGTGGTAGGATATCTCCGTTCAGCAGACGCTCAAACGGGCT ATCCCCATACCGGAATAGCGCACCCCAGTCTCCGTTGGGAGGAACAGGAGTACCTCGAGGCGGTAGCAAGTCTCAGGAACTCACTCCTCTTTATCGCACC AACCAAGCTGCAGAACTCAAAACTTCGGAGTCGTCCTCGTTGCTCAAACGAAGCTCAGATTCCTCAGAAGTGATGATGGGAAATGCAACAGGAAAGGAGC TCATGGTTGTTCCGAAAACCAATGAAAATGATGTTTGTGGAGAAGTATCCAAAGCCTTGGTATGTGTAAGTGGGAACGTTGATGCAGGGGTAGACACTGT TTCGTCAGGGGATTCGTCGTCTTTTCCTCCTGTCCTGCTTAAGACGCCTTCGGAGTCGTGGCTTTGGCGAACTCTGCCTGAAGTCTCGTCGAGGAGCCGC ACCCCTATGGGTCGTGCATCGAGTTTCCGGGGCAAATGGGTCGATTCAAAGATGAGTTCAACAACAACAGCAACTAGCAAGTGGGAGAGCATGGTGAAAT CTTCCTATTTGCATCATGATCATGGCCGTTATTCCGAGGTAAATTCATCCACATTACTCTCAAATCATCATCTTGTAAGTTCCAAGTTCCAACCCATTTT CACAAAAGCAGAGAAGTTAATGTCTGACATTGCTGTTATTCTGCTTCATTCACCAGGAACTTGTACCGCATCCTTCACAGCATCTTACGAGCTAGAGATG CTGAATCTTTACGAGTTTTTGTGTGTAAAGATTCTGAGCCTTGTACAATTCATTCACTCAAAGTTTCTACTGGAAAGAAGCAGCATCCGCTCATGTTGGT CTATGGTTTCATCTCATTTTTTTTTGTAA
AA sequence Show only first row Show all	>Lus10015280 pacid=23178820 polypeptide=Lus10015280 locus=Lus10015280.g ID=Lus10015280.BGIv1.0 annot-version=v1.0 MEERKLNLNAPLLSVRRFSSPIRATRDSKTHHDQEDDSKLVLHRRYSLPCLDQKQQQQVTEPVAVPFHWEQIPGRRKDNDGGNSSGSSRFPIRWVPSIVK NQEVKTTSEVKSLVVGRVKSQGNDDVDDDDDDKFSDALESLSAMDSCSMKCSSSGMSSSSNCLHSGNFETDPKTRDFMMSRFLPAAKAMTLDQQPQYSAK KQQQQQQSRPIVVVRRLESAAAIVPYCHPKEESAEEDCDDDEYEEESVSLPMKGCGLFLPRLCFKNSICLFSPVPGMKVKSLNSFSSSSTGKASKPSKAA SSSSSSSPSARKSSKDDTSKQRPSRGVQSPRTMEVVENNKLVGGSDSFSERQMSGRISPFSRRSNGLSPYRNSAPQSPLGGTGVPRGGSKSQELTPLYRT NQAAELKTSESSSLLKRSSDSSEVMMGNATGKELMVVPKTNENDVCGEVSKALVCVSGNVDAGVDTVSSGDSSSFPPVLLKTPSESWLWRTLPEVSSRSR TPMGRASSFRGKWVDSKMSSTTTATSKWESMVKSSYLHHDHGRYSEVNSSTLLSNHHLVSSKFQPIFTKAEKLMSDIAVILLHSPGTCTASFTASYELEM LNLYEFLCVKILSLVQFIHSKFLLERSSIRSCWSMVSSHFFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45850			Protein of unknown function (D...		Lus10015280 [exp]	0	1
AT1G21870		GONST5	golgi nucleotide sugar transpo...		Lus10025645 [exp]	1.0	0.9012
AT3G50120			Plant protein of unknown funct...		Lus10011501 [exp]	2.4	0.8942
AT1G20450		LTI45, ERD10, L...	LOW TEMPERATURE INDUCED 45, LO...		Lus10034568 [exp]	3.2	0.8847
AT4G18630			Protein of unknown function (D...		Lus10025403 [exp]	4.6	0.8706
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10020535 [exp]	5.7	0.8866
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Lus10011001 [exp]	6.7	0.8875
AT5G62620			Galactosyltransferase family p...		Lus10037238 [exp]	6.9	0.8694
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10018848 [exp]	8.1	0.8761
AT3G05675			BTB/POZ domain-containing prot...		Lus10033220 [exp]	10.0	0.8683
AT2G46420			Plant protein 1589 of unknown ...		Lus10030264 [exp]	10.8	0.8686

Compare expression of checked genes

Lus10015280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.