Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45890 377 / 3e-131 SAG12 senescence-associated gene 12 (.1) AT5G50260 309 / 2e-104 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G48340 304 / 3e-102 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT4G35350 300 / 6e-101 XCP1 xylem cysteine peptidase 1 (.1.2) AT3G49340 297 / 6e-100 Cysteine proteinases superfamily protein (.1) AT5G43060 298 / 1e-98 Granulin repeat cysteine protease family protein (.1) AT4G36880 295 / 1e-98 CP1 cysteine proteinase1 (.1) AT2G27420 292 / 8e-98 Cysteine proteinases superfamily protein (.1) AT3G48350 292 / 1e-97 CEP3 cysteine endopeptidase 3, Cysteine proteinases superfamily protein (.1) AT1G47128 291 / 6e-96 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025410 [exp] 466 / 5e-166 AT5G45890 382 / 2e-132 senescence-associated gene 12 (.1) Lus10015286 [exp] 465 / 1e-165 AT5G45890 393 / 7e-137 senescence-associated gene 12 (.1) Lus10025409 [exp] 422 / 3e-149 AT5G45890 304 / 2e-102 senescence-associated gene 12 (.1) Lus10032406 [exp] 366 / 6e-127 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10029799 [exp] 364 / 4e-126 AT5G45890 393 / 3e-137 senescence-associated gene 12 (.1) Lus10006542 [exp] 364 / 5e-126 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10028501 [exp] 363 / 1e-125 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10003275 [exp] 363 / 1e-125 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10020723 [exp] 363 / 1e-125 AT5G45890 398 / 3e-139 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G055900 [exp] 384 / 4e-134 AT5G45890 438 / 5e-155 senescence-associated gene 12 (.1) Potri.005G088600 [exp] 376 / 1e-130 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.005G089100 [exp] 375 / 1e-130 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.004G056100 [exp] 374 / 3e-130 AT5G45890 419 / 2e-147 senescence-associated gene 12 (.1) Potri.004G056500 [exp] 372 / 3e-129 AT5G45890 417 / 2e-146 senescence-associated gene 12 (.1) Potri.004G056000 [exp] 372 / 3e-129 AT5G45890 417 / 2e-146 senescence-associated gene 12 (.1) Potri.004G056316 [exp] 371 / 4e-129 AT5G45890 419 / 3e-147 senescence-associated gene 12 (.1) Potri.004G056258 [exp] 371 / 4e-129 AT5G45890 417 / 8e-147 senescence-associated gene 12 (.1) Potri.004G056200 [exp] 370 / 2e-128 AT5G45890 420 / 1e-147 senescence-associated gene 12 (.1) Potri.004G056366 [exp] 369 / 3e-128 AT5G45890 416 / 5e-146 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10015285 pacid=23178717 polypeptide=Lus10015285 locus=Lus10015285.g ID=Lus10015285.BGIv1.0 annot-version=v1.0 ATGCGGGTGAGCCACGACGACTGGGCCAGAAAACACGGCAAGACATACAAAGATTCCGCCGAGAAGGAGAAGAGATTCCTTATCTTTAAAGACAACGTCC GACGTATCGAGGAATTTAATAATAAAGACGACAGCTCGAGTTTCAAACTTGGGGTCAACAAATTTACTGACCTTACCAACGAAGAGTTTCGGTCCAAGTA TTTGGGTTACAATAACAAGATGACGTCGTCTCCGAGAGGGAAGTCCGCCGGTAGGGGCGGATTCCGGTACGCGAATGCAACCGCCGTTCCTGCCGTCGTG GACTGGAGAAAGTCCGGCGCGGTCACCGGAGTTAAAGACCAAGGAGCTTGTGGATGTTGTTGGGCATTTTCGGCTGTGGCAGCGATAGAAGGAGCGACAA AACTCAAAACCGGAAAGCTAGTCTCCCTGTCCGAGCAACAACTCGTCGATTGCGATGTCGACGGCGTTGACTCGGGCTGTGAGGGAGGACTAATGGACGA CGCCTTCAAATACATACTCTCCAACAGCGGTGCCCTGACCACTGAAACCAACTACCCGTACGAAGGGGAGGACGGAGTCTGCAACAAGCGACAATCATCC TCCCCCGCAGCCAAGATCACGGGTTATGAGGATGTGCCCGAGAATAGTGAACACGCCCTCATGCAGGCCGTGGCCCACCAGCCCGTGTCAGTGGCCATAG AAGGAGGTGGGTTCATGTTCCAGGCATACCATAGCGGGGTGTTCGGTGGGTCGTGCGGGACCGACTTGGACCATGCTGTAACTGCGGTCGGTTATGGCAG TGATACCAGCGGGAAGAAGTACTGGATTTTGAAGAACTCGTGGGGAGCGGATTGGGGAGAGAATGGATACATGAGGATTAAGAAAGATAGTGATTTGAAA GAAGGCTTGTGTGGGCTGGCCATGGAAGCTTCGTATCCCACCGTGTGA
AA sequence Show only first row Show all	>Lus10015285 pacid=23178717 polypeptide=Lus10015285 locus=Lus10015285.g ID=Lus10015285.BGIv1.0 annot-version=v1.0 MRVSHDDWARKHGKTYKDSAEKEKRFLIFKDNVRRIEEFNNKDDSSSFKLGVNKFTDLTNEEFRSKYLGYNNKMTSSPRGKSAGRGGFRYANATAVPAVV DWRKSGAVTGVKDQGACGCCWAFSAVAAIEGATKLKTGKLVSLSEQQLVDCDVDGVDSGCEGGLMDDAFKYILSNSGALTTETNYPYEGEDGVCNKRQSS SPAAKITGYEDVPENSEHALMQAVAHQPVSVAIEGGGFMFQAYHSGVFGGSCGTDLDHAVTAVGYGSDTSGKKYWILKNSWGADWGENGYMRIKKDSDLK EGLCGLAMEASYPTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10015285 [exp]	0	1
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10012675 [exp]	2.2	0.7909
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10035433 [exp]	4.2	0.7963
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10003093 [exp]	4.5	0.7948
AT5G38710			Methylenetetrahydrofolate redu...		Lus10003052 [exp]	7.6	0.7962
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10037295 [exp]	11.2	0.7818
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10022187 [exp]	17.5	0.7278
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10020819 [exp]	28.4	0.7133
AT5G67390			unknown protein		Lus10011531 [exp]	28.9	0.7363
					Lus10011947 [exp]	32.7	0.7687
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Lus10028385 [exp]	33.0	0.7030

Compare expression of checked genes

Lus10015285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.