Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15010 256 / 8e-82 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G41060 176 / 2e-50 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G56860 170 / 5e-48 UBA2A UBP1-associated protein 2A (.1.2.3.4.5) AT2G22090 102 / 5e-24 UBA1A RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G19380 91 / 1e-19 RNA recognition motif (RRM)-containing protein (.1) AT2G22100 87 / 1e-18 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G78260 71 / 2e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G76460 70 / 4e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G24770 69 / 7e-13 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT5G50250 68 / 2e-12 CP31B chloroplast RNA-binding protein 31B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025418 [exp] 475 / 1e-167 AT3G15010 336 / 8e-113 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032516 [exp] 180 / 2e-52 AT3G56860 405 / 6e-139 UBP1-associated protein 2A (.1.2.3.4.5) Lus10043016 [exp] 177 / 2e-50 AT3G56860 463 / 1e-160 UBP1-associated protein 2A (.1.2.3.4.5) Lus10023817 [exp] 170 / 6e-49 AT3G15010 188 / 5e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10021035 [exp] 159 / 6e-43 AT3G15010 182 / 4e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10041952 [exp] 73 / 6e-14 AT5G50250 272 / 2e-90 chloroplast RNA-binding protein 31B (.1) Lus10002684 [exp] 72 / 1e-13 AT2G46780 228 / 1e-72 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030202 [exp] 71 / 2e-13 AT2G46780 224 / 2e-71 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10017962 [exp] 71 / 2e-13 AT5G50250 274 / 5e-92 chloroplast RNA-binding protein 31B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G065200 [exp] 312 / 3e-104 AT3G15010 295 / 1e-97 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G055400 [exp] 312 / 9e-104 AT3G15010 303 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G377400 [exp] 265 / 7e-85 AT3G15010 342 / 2e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G023800 [exp] 180 / 7e-52 AT3G56860 348 / 1e-115 UBP1-associated protein 2A (.1.2.3.4.5) Potri.006G025600 [exp] 179 / 1e-51 AT3G56860 353 / 2e-117 UBP1-associated protein 2A (.1.2.3.4.5) Potri.006G190900 [exp] 168 / 1e-48 AT3G15010 179 / 6e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.005G081600 [exp] 167 / 1e-47 AT2G41060 213 / 8e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G220600 [exp] 163 / 2e-45 AT3G56860 232 / 1e-70 UBP1-associated protein 2A (.1.2.3.4.5) Potri.016G048100 [exp] 160 / 2e-45 AT3G15010 181 / 1e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G179100 [exp] 72 / 9e-14 AT2G46780 275 / 2e-91 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10015290 pacid=23178823 polypeptide=Lus10015290 locus=Lus10015290.g ID=Lus10015290.BGIv1.0 annot-version=v1.0 ATGGATTTCTCCAAGAAGCGCAAGGTCGACGAATTCGGCGTAGCATCATCCCCCGACGGCTCATCCGCCGTCGTCGCCACCACTAACAACTCCTCTTCCG CCGCAGCATCCTCCCTAACTCCCGAAGACATTCGCAAGATCATCGAGCCGTTCACCAAGGACCAGCTGCTCGACATCCTCCAGACAGCCGCCGTGCACCA CTCCGACGTCCTTGACGCCATCCGCTCCCTCGCCGACAGCGACGTCACCCTGCGGAAGCTCTTCATCCGGGGACTCTCGTCGGAGACCACGACGGAGACT CTCCGGACACTCTTCACCGCCTTCGGCGAGCTCGAGGAGGCGATAGTGATACTTGATAAGAACACCGGAAAATCTAAGGGGTATGGATTCATTACTTTCA AGCATATTGATGGAGCGAGGATGGCGCTGAAGGAGCCGAGCAAGAAGATTGACGGGAGGATGACGGTGACGCAGCTGGCGTCTGCTGGCCAGTCGAATTC CAGCGGAGGTGGTGGCGTTGATGTTTCCTTGAGGAAGATTTATGTTGGGAATGTGCCGTACGATATTCCTTCGGAGAGATTGTTGGCGTTTTTCTCTATG TATGGTGAGATTGAGGAAGGGCCTTTAGGGTTTGATAAGTCGTCAGGTAAAGCTAAGGGGTTCGCCTTTATGATTTACAAGACTGAGGAAGGTGCTAGGG CGGCGATTGCTGAGCCGATGAAGAATATTAATGGATTTCAAGTGATATGTAAACTTGCTGCTGATAATAAGAAAGGGAAGCCTCAGGGAGCTGATGGTTC CCAGAGTCAGGGGAACTTACAGCAGCCATCGATGCAGCATCAGCAGCAGCAACCGCAGGGTTATGGAGCTGGCTCAATGCCTCCGTATGGAGGGTTTTCT GGCGGGATGAATAATAGTGGGTATGGGATGAATCCTGCTATGCCTGGAGCGATGGGGAATGGTGGCTATGGTGGTTATGGTGGGGTTTCGCAGTACGGTG GACCTGGTTCGGGGGATTACGGGTTGAATAATGTAGGGGGTGCGATGTTCCGTCCTCCTCCAGGCTCTGCGGGTGCCGGTTCGGCAGGATATCCGGATAG CGGACCATATGGGATGCCTCAGCAACACCAGCCACCAACTATGGCTCCTAGAATTCCTCCCGGTGGGATGTATCCAGGTGGACCACCTTACTACTGA
AA sequence Show only first row Show all	>Lus10015290 pacid=23178823 polypeptide=Lus10015290 locus=Lus10015290.g ID=Lus10015290.BGIv1.0 annot-version=v1.0 MDFSKKRKVDEFGVASSPDGSSAVVATTNNSSSAAASSLTPEDIRKIIEPFTKDQLLDILQTAAVHHSDVLDAIRSLADSDVTLRKLFIRGLSSETTTET LRTLFTAFGELEEAIVILDKNTGKSKGYGFITFKHIDGARMALKEPSKKIDGRMTVTQLASAGQSNSSGGGGVDVSLRKIYVGNVPYDIPSERLLAFFSM YGEIEEGPLGFDKSSGKAKGFAFMIYKTEEGARAAIAEPMKNINGFQVICKLAADNKKGKPQGADGSQSQGNLQQPSMQHQQQQPQGYGAGSMPPYGGFS GGMNNSGYGMNPAMPGAMGNGGYGGYGGVSQYGGPGSGDYGLNNVGGAMFRPPPGSAGAGSAGYPDSGPYGMPQQHQPPTMAPRIPPGGMYPGGPPYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10015290 [exp]	0	1
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10012507 [exp]	2.0	0.9328
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10025418 [exp]	2.2	0.9126
AT3G02650			Tetratricopeptide repeat (TPR)...		Lus10013236 [exp]	5.0	0.9341
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10026663 [exp]	6.5	0.9105
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10018486 [exp]	6.6	0.8767
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Lus10019764 [exp]	7.3	0.8696
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031186 [exp]	7.5	0.9294
AT5G16420			Pentatricopeptide repeat (PPR-...		Lus10030222 [exp]	8.2	0.8827
AT5G45330		DCP5-L	decapping 5-like (.1)		Lus10035052 [exp]	10.8	0.8995
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10016664 [exp]	12.7	0.8928

Compare expression of checked genes

Lus10015290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.