Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33070 962 / 0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT5G01320 957 / 0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) AT5G54960 942 / 0 PDC2 pyruvate decarboxylase-2 (.1) AT5G01330 930 / 0 PDC3 pyruvate decarboxylase-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003384 [exp] 969 / 0 AT5G54960 1068 / 0.0 pyruvate decarboxylase-2 (.1) Lus10002217 [exp] 967 / 0 AT5G54960 1061 / 0.0 pyruvate decarboxylase-2 (.1) Lus10027820 [exp] 944 / 0 AT5G54960 1058 / 0.0 pyruvate decarboxylase-2 (.1) Lus10005048 [exp] 939 / 0 AT5G54960 1067 / 0.0 pyruvate decarboxylase-2 (.1) Lus10018181 [exp] 642 / 0 AT4G33070 683 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Lus10025654 [exp] 642 / 0 AT5G54960 686 / 0.0 pyruvate decarboxylase-2 (.1) Lus10016751 [exp] 66 / 5e-11 AT3G48560 1048 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10022445 [exp] 48 / 9e-06 AT3G48560 325 / 7e-108 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Lus10032040 [exp] 47 / 1e-05 AT3G48560 266 / 2e-85 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G064000 [exp] 1027 / 0 AT5G01320 962 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.004G054100 [exp] 1023 / 0 AT4G33070 949 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.017G151900 [exp] 1004 / 0 AT5G01320 959 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.016G120100 [exp] 971 / 0 AT4G33070 1070 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.006G102500 [exp] 957 / 0 AT5G01320 1023 / 0.0 Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (.1) Potri.015G097200 [exp] 76 / 3e-14 AT3G48560 1058 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1) Potri.012G098300 [exp] 76 / 3e-14 AT3G48560 1052 / 0.0 TRIAZOLOPYRIMIDINE RESISTANT 5, IMIDAZOLE RESISTANT 1, ACETOLACTATE SYNTHASE, ACETOHYDROXY ACID SYNTHASE, chlorsulfuron/imidazolinone resistant 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02775 [flax] [poplar] TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CL0254 [flax] [poplar] THDP-binding PF02776 [flax] [poplar] TPP_enzyme_N Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CL0085 [flax] [poplar] FAD_DHS PF00205 [flax] [poplar] TPP_enzyme_M Thiamine pyrophosphate enzyme, central domain
Representative CDS sequence Show only first row Show all	>Lus10015291 pacid=23178786 polypeptide=Lus10015291 locus=Lus10015291.g ID=Lus10015291.BGIv1.0 annot-version=v1.0 ATGGAAGCTGCAAACCAAGTGGGTTCCGCCGCTCATCCGAGCACAGCCCCCTCCGCCGTCGCCGGAAAACAAACTCCGGGGACCTTAGGCCGCCACCTGG CGCGGCGGCTGGTCGAGATCGGAGTCCGGGACGTGTTCTCTGTTCCCGGCGACTTCAACTTGACCCTGCTGGACCATTTGATCGCGGAGCCGGAGCTGAA TCTCGTTGGATGTTGTAACGAGCTCAACGCCGGATACGCCGCCGACGGGTACGCTCGGGCGAAGGGTGTCGGAGCCTGCGCCGTGACGTTCACCGTCGGC GGGCTCAGCGTGATTAATGCTATAGCTGGTGCTTATAGTGAGAATTTGCCCGTGATATGTATTGTCGGGGGACCGAATTCGAACGACTTCGGGACGAATC GGATTCTGCATCATACGATTGGGTTGCCAGATTTTAGTCAGGAGTTGAGGTGTTTTCAGACTATTACTTGTTATCAGGCAGTGGTGAACAACTTGGACGA TGCACACGAACAAATCGACACAGCGATCTCGACAGCATTGAAAGAGAGCAAGCCGGTTTACATCAGCATCAGCTGCAATCTCTCAGCAATTCCTCATCCT ACATTCATCAGAGATCCAGTCCCATTCTCCATTTCACCAGTTGTGAGCAACCAACTGGGGTTGGAAGCAGCTGTTGAAGCAGCTGCAGAGTTCCTGAACA AAGCTGTGAAGCCTGTGATCGTTGGCGGCCCGAAATTACGGGGAGGGAAAGCACAGAAAGGGTTTGTTGATCTTGTTGATGCTAGTGGTTATGCGGTGGC CGTCATGCCTTCAGGTAAAGGGCTGGTTCCGGAACATCTTCCGAACTTCATAGGGACGTACTGGGGCGCCGTGAGCACAAGCTTCTGCGGGGAAATTGTC GAATCCGCCGATGCATACGTATTCGTGGGGCCGATCTTCAATGACTACAGCTCGGTCGGGTACTCCTTGTTGATCAAGAAGGAGAAGGCAATCATAGTGC AGCCTAACCGCGTGACAATCGGGAATGGCCCTTCCTTCGGGTGGGTGTTCATGAATGACTTCTTGGCCGCACTGGCCAAGAAGTTGAGGAAGAACACCGC GGCTATCGAGAACCACAGGCGCATTTTCGTGCCTCCCGGGATGCCTCTCAAGTGTGGTAATGGTGAGCCTCTAAAGGTCAACGTTCTGTTCAAGCACATT CAGGAGATGCTGAGTGGGGATGCGGCTGTAATTGCTGAAACTGGAGACTCATGGTTCAACTGCCAGAAACTCCACCTACCGGAAAATTGCGGCTACGAAT TCCAGATGCAGTACGGGTCTATCGGTTGGTCAGTGGGCGCTACGCTCGGTTATGCTCAAGCAGCTAAAGACAAGCGTGTCATTGCTTGCATAGGTGATGG CAGTTTTCAGGTGACCGCGCAGGATGTTTCGACGATGATTCGCTGTGGGCAGAGGACTATCATATTCCTGATCAACAACGGAGGCTACACGATCGAGGTC GAGATCCACGACGGTCCGTACAATGTGATCAAGAACTGGAACTACACTGCTGTTGTTGATGCCATACACAATGGACAAGGCAAATGCTGGACTAACAAGG TCCGAACAGAGGAAGAGCTTACGGAAGCCATTGAAAAGGCAACGGGAGAGCACAAGGACGATCTGTGCTTCATTGAGGTGATGCTTCACAAGGATGACAC AAGCAAAGAGCTATTGGAATGGGGTTCTAGAGTTGCTTCTGCTAACAGCAGGCCCCCAAATCCTCAGTGA
AA sequence Show only first row Show all	>Lus10015291 pacid=23178786 polypeptide=Lus10015291 locus=Lus10015291.g ID=Lus10015291.BGIv1.0 annot-version=v1.0 MEAANQVGSAAHPSTAPSAVAGKQTPGTLGRHLARRLVEIGVRDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARAKGVGACAVTFTVG GLSVINAIAGAYSENLPVICIVGGPNSNDFGTNRILHHTIGLPDFSQELRCFQTITCYQAVVNNLDDAHEQIDTAISTALKESKPVYISISCNLSAIPHP TFIRDPVPFSISPVVSNQLGLEAAVEAAAEFLNKAVKPVIVGGPKLRGGKAQKGFVDLVDASGYAVAVMPSGKGLVPEHLPNFIGTYWGAVSTSFCGEIV ESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPNRVTIGNGPSFGWVFMNDFLAALAKKLRKNTAAIENHRRIFVPPGMPLKCGNGEPLKVNVLFKHI QEMLSGDAAVIAETGDSWFNCQKLHLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQDVSTMIRCGQRTIIFLINNGGYTIEV EIHDGPYNVIKNWNYTAVVDAIHNGQGKCWTNKVRTEEELTEAIEKATGEHKDDLCFIEVMLHKDDTSKELLEWGSRVASANSRPPNPQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33070			Thiamine pyrophosphate depende...		Lus10015291 [exp]	0	1
AT2G47430		CKI1	CYTOKININ-INDEPENDENT 1, Signa...		Lus10029849 [exp]	3.2	0.9751
					Lus10002596 [exp]	3.6	0.9792
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10010506 [exp]	5.0	0.9726
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10005048 [exp]	5.2	0.9738
AT2G26060		EMB1345	embryo defective 1345, Transdu...		Lus10021365 [exp]	6.2	0.9642
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10010936 [exp]	6.9	0.9611
AT3G10920		MSD1, MEE33, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10030534 [exp]	6.9	0.9733
AT4G10270			Wound-responsive family protei...		Lus10018530 [exp]	8.9	0.9687
AT3G08650			ZIP metal ion transporter fami...		Lus10035606 [exp]	9.0	0.9680
AT5G39890			Protein of unknown function (D...		Lus10003861 [exp]	9.2	0.9717

Compare expression of checked genes

Lus10015291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.