Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18570 412 / 6e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G25690 310 / 8e-95 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) AT1G07120 251 / 3e-77 unknown protein AT1G48280 252 / 8e-76 hydroxyproline-rich glycoprotein family protein (.1) AT4G04980 59 / 6e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025419 [exp] 878 / 0 AT4G18570 565 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000986 [exp] 545 / 0 AT4G18570 501 / 1e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013931 [exp] 369 / 1e-120 AT4G18570 321 / 5e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034382 [exp] 315 / 2e-95 AT3G25690 1221 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10034264 [exp] 313 / 8e-95 AT3G25690 1230 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10031863 [exp] 270 / 5e-84 AT1G07120 393 / 2e-135 unknown protein Lus10031293 [exp] 157 / 6e-43 AT1G07120 267 / 3e-87 unknown protein Lus10038307 [exp] 88 / 1e-17 AT1G11070 330 / 2e-99 unknown protein Lus10018473 [exp] 78 / 1e-14 AT4G04980 347 / 1e-104 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G054900 [exp] 421 / 3e-140 AT4G18570 420 / 1e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G064500 [exp] 400 / 7e-132 AT4G18570 432 / 2e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G130800 [exp] 323 / 2e-98 AT3G25690 1030 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.011G156500 [exp] 318 / 2e-98 AT3G25690 338 / 2e-103 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.001G460300 [exp] 312 / 5e-96 AT3G25690 345 / 3e-106 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.009G073600 [exp] 296 / 4e-94 AT1G07120 434 / 4e-151 unknown protein Potri.001G279000 [exp] 294 / 3e-93 AT1G07120 440 / 2e-153 unknown protein Potri.010G003100 [exp] 259 / 2e-78 AT1G48280 356 / 2e-116 hydroxyproline-rich glycoprotein family protein (.1) Potri.011G047100 [exp] 70 / 4e-12 AT4G04980 358 / 1e-109 unknown protein Potri.004G038400 [exp] 66 / 8e-11 AT4G04980 387 / 4e-121 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015292 pacid=23178762 polypeptide=Lus10015292 locus=Lus10015292.g ID=Lus10015292.BGIv1.0 annot-version=v1.0 ATGGTGGCCGGAAAAGTCAGAGCAGCTATGGGTCTCCAGAAGCCACCGCCGCCGCCGCCGCCCAAGCCTCTTATTATTTCAGCTCCTACTCCCTCCGGCA CCGCCGCTGGTAAACCGTCGTCAAAGACTGTGTTCTCGCGCTCCTTTGGCGTCTACTTCCCGCGATCTTCCGCGCAGGTCCAGCCCCGTCCTCCCGACGT CGCCGACCTCCTCCGCTTAGTGGAGGAGCTCCGGGAGCGGGAGTCGAGGCTGAGGACCGAGCTCCTCGAGTTCAAGCTGCTGAGAGAGACCGCCGCGATC GTGCCGAAGATTGAGGCGGAGATTTCTGCGAAGAATGCGGAGATCGAAACGGCTAGGAGGAGGATTGTGGAGATGGAAGAGAAGGAGAGGAAGTTTGAAC AGATTGAGGATGAGATTCGTGAGGTGTGGAAAACGGCGACGGAGAAGGATGAGAAGTGTAAAGTGATGGAGGTGGAGATTCAGGAGTTGAGGAAAACAGC GTCGGAGAAGGATGAGAAGTTTAGGGAGATGGAGGAGCAGATTCGGGAGCTGAGGAGAGTTGCGTCGGAGAAAGATGAGGTTCAGGAGCAGAGGTTTCGG GGTTTGATGGAAGTGACTATGAAGTCGAATCTGATTAGGAATTTGAGGAGAGGAGGTAACAAGTGTTCGCCGGAGAACGGTACGGCGAGGCCGGAAAATG CGGATGTAGTTATGAAGAGAGACGAAACGGAAAACGAAGGGACGAGTGAGTTGACGAGGTGTGACTCGGAGGAACTCGCTGAGTCGTCAGCGTTCCCTAA TGTCAGATCTCGCTGTCCTAGAGTTCCGAAGCCTCCTCCACCGAAACGGCCTTCGTCGTCGTCTTGTTTCTCCGATCAATCTGCTTCTGTAAATGTTTCA GCACCTCCACCGCCGCCTCCCCTGCCTCCAGTGATGGCGTCAACCAAACCGGCGCCAGCTGCTCTCCTGCCGCCTCCACCACCTCCTCCTCCTCCGCCGA AGGAACGCAGAGCTGGAACGGCGAAGGTGAGACGAGTCCCTGAAGTTGTGGAGTTCTACCATTCCCTAATGCGTAGGGACTCGAGGAAGGACTCCGCCGC CGGGGCGGCTGATTCCGCCGCTGCCACCGCCAATTCCCGCGACATGATCGGCGAAATCGAGAATCGATCGGCCTATTTACTTGCAATAAAAACGGACGTG GAAACGCAGGGTGAGTTCATAAGGTTCTTAATCAAAGAAGTGCAGAATGCTGCCTTCTCCGATATTGAAGATGTAGTCCCTTTCGTTAAATGGCTGGACG ATGAGCTATCCTATCTGGTGGATGAAAGGGCGGTGTTGAAGCATTTCGAGTGGCCAGAGCAGAAGGCCGATGCAATGAGGGAAGCAGCATTCGGGTACTG TGATCTGAAGAAAGTAGAATCGGAAGCATCTTCTTTCCGAGACGTTGCTCGCCAGCCATGCATTTCAGCTCTCAAGAAAATGCAGGCTCTGCTTGAAAAG TTAGAGCACGGGGTGTACAGTTTGTCAAGAATGAGGGAATCAGCGATGAAACGGTACAAGGAGTTTGGGATTCCGATCACTTGGATGCTTGAAACAGGGC TAGTTACCCAGATAAAATTGGCATCGGTTAAACTAGCCATGAATTACATGAAGCGGGTCTCTGCAGAACTGGAGTCTGTCGATAGTCCCTCCGATGAAGA GGATCTTGTCATCCAAGGCGTTCGTTTCGCTTTTCGAGTCCATCAGTTTGCGGGAGGATTCGACGGGGAAACGATGAGGGCATTCGAAGAGTTGAGGGAT AAAGCGAGGTCATGCCACGTACAATGCCATAGCCAGCAACAACAACAACAACAACAACAGAGACTCATTTGCAGCAAATTCACATGA
AA sequence Show only first row Show all	>Lus10015292 pacid=23178762 polypeptide=Lus10015292 locus=Lus10015292.g ID=Lus10015292.BGIv1.0 annot-version=v1.0 MVAGKVRAAMGLQKPPPPPPPKPLIISAPTPSGTAAGKPSSKTVFSRSFGVYFPRSSAQVQPRPPDVADLLRLVEELRERESRLRTELLEFKLLRETAAI VPKIEAEISAKNAEIETARRRIVEMEEKERKFEQIEDEIREVWKTATEKDEKCKVMEVEIQELRKTASEKDEKFREMEEQIRELRRVASEKDEVQEQRFR GLMEVTMKSNLIRNLRRGGNKCSPENGTARPENADVVMKRDETENEGTSELTRCDSEELAESSAFPNVRSRCPRVPKPPPPKRPSSSSCFSDQSASVNVS APPPPPPLPPVMASTKPAPAALLPPPPPPPPPPKERRAGTAKVRRVPEVVEFYHSLMRRDSRKDSAAGAADSAAATANSRDMIGEIENRSAYLLAIKTDV ETQGEFIRFLIKEVQNAAFSDIEDVVPFVKWLDDELSYLVDERAVLKHFEWPEQKADAMREAAFGYCDLKKVESEASSFRDVARQPCISALKKMQALLEK LEHGVYSLSRMRESAMKRYKEFGIPITWMLETGLVTQIKLASVKLAMNYMKRVSAELESVDSPSDEEDLVIQGVRFAFRVHQFAGGFDGETMRAFEELRD KARSCHVQCHSQQQQQQQQQRLICSKFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10015292 [exp]	0	1
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10021322 [exp]	2.8	0.8683
AT3G22520			unknown protein		Lus10000233 [exp]	3.5	0.8643
AT5G28640		ATGIF1, GIF1, A...	ARABIDOPSIS GRF1-INTERACTING F...		Lus10006568 [exp]	9.2	0.8717
AT5G50670	SBP	SPL13B	SQUAMOSA PROMOTER-BINDING PROT...		Lus10003126 [exp]	9.9	0.8536
AT1G78880			Ubiquitin-specific protease fa...		Lus10030215 [exp]	12.4	0.7659
AT3G13560			O-Glycosyl hydrolases family 1...		Lus10039179 [exp]	12.4	0.8613
AT4G00310		MEE46, EDA8	MATERNAL EFFECT EMBRYO ARREST ...		Lus10005116 [exp]	13.5	0.7589
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Lus10000104 [exp]	14.1	0.8561
AT2G46310	AP2_ERF	CRF5	cytokinin response factor 5 (....		Lus10003037 [exp]	19.3	0.8045
AT3G02400	FHA		SMAD/FHA domain-containing pro...		Lus10018056 [exp]	22.2	0.8669

Compare expression of checked genes

Lus10015292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.