Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46030 154 / 3e-46 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025438 [exp] 150 / 2e-45 AT5G46030 127 / 8e-40 unknown protein Lus10014995 [exp] 74 / 6e-16 AT5G46030 74 / 6e-18 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G373400 [exp] 169 / 2e-52 AT5G46030 122 / 1e-37 unknown protein Potri.011G097300 [exp] 167 / 4e-52 AT5G46030 146 / 3e-47 unknown protein Potri.014G056000 [exp] 94 / 8e-24 AT5G46030 92 / 1e-25 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF05129 [flax] [poplar] Elf1 Transcription elongation factor Elf1 like
Representative CDS sequence Show only first row Show all	>Lus10015293 pacid=23178741 polypeptide=Lus10015293 locus=Lus10015293.g ID=Lus10015293.BGIv1.0 annot-version=v1.0 ATGGGAAAGAGGAAGTCAAGGGCAAAGCCAGCGACGAGGAAGAGGATGGACAAGCTGGATACTGTGTTCAGTTGTCCCTTTTGCAATCATGGAACCAGTG TTGAGTGTCGCATTGACATGAAGAACTTGATTGGCGAGGCTTCATGCGGTATATGTCAAGAGAGTTTCAGCACTACTATCACAGCCTTAACCGAACCAAT CGACGTATACAGCGAATGGATTGATGAGTGCGAACGAGTTAATAATCCCGATGATGATGAACGTACTGAGATTACGTGGGCTGACGTTGAAGAAGATGAT GATGACTGGGCTGAGGCTGAAGAAAAGAAGCAGATTCTGGAGGCTGAGTGTGAAGAAGATAAGCAGATTCTGAAGGCTGAGTGTGAAGAAGATAAGCAGA TTCTGAAGGCTGAGTGTGAAGAAGATAAGCAGATTCTGAAGGCTGAGTGTGAAGAAGATAAGCAGATTCTGAAGGCTGAGTGTGAAGAAGATAAGCAGAT TCTGAAGGCTGAGTGTGAAGAAGATAAGCAGATTCTGAAGGCTGAGTGTGAAGAAGATAAGCAGATTCTGAAGGCTGAGTGTGAAGAAGATAAGCAGATT CTGAAGGCTGAGTGTGAAGAAGATAAGCAGATTCTGAAGGCTGAGTGTGAAGAAGATAAGCAGATTCTGAAGGCTGAGTGTGAAGAAGATAAGCAGATTC TGAAGGCTGAGTGTGAAGAAGATAAGCAGATTCTGAAGGCTGAGTGTGAAGAAGATAAGCAGATTCTGAAGGCTGAGTGTGAAGAAGATAAGCAGATTCT GAAGGCTGAGTGTGAAGAAGATAAGCAGATTCTGAAGGCTGAGTGTGAAGAAGATAAGCAGATTCTGAAGGCTGAGTGTGAAGAAGATAAGCAGATTCTG AAGGCTGTGTGGGAAGAAGATGATGAGATACTGGAGGGTGAGTGTGAAGAAGATGAACAGATTCTGGAGTGTGAGTGGGAAAAAGATGAACACTTTCTGG AGGTTAAGGTCCTGCTAAACCAACGGTATAAAACGGAGGGTGCATTTGCCTTTGACCATCTTAAAATGAGTAGCGCCTTCTTCCGCTAG
AA sequence Show only first row Show all	>Lus10015293 pacid=23178741 polypeptide=Lus10015293 locus=Lus10015293.g ID=Lus10015293.BGIv1.0 annot-version=v1.0 MGKRKSRAKPATRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTITALTEPIDVYSEWIDECERVNNPDDDERTEITWADVEEDD DDWAEAEEKKQILEAECEEDKQILKAECEEDKQILKAECEEDKQILKAECEEDKQILKAECEEDKQILKAECEEDKQILKAECEEDKQILKAECEEDKQI LKAECEEDKQILKAECEEDKQILKAECEEDKQILKAECEEDKQILKAECEEDKQILKAECEEDKQILKAECEEDKQILKAECEEDKQILKAECEEDKQIL KAVWEEDDEILEGECEEDEQILECEWEKDEHFLEVKVLLNQRYKTEGAFAFDHLKMSSAFFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46030			unknown protein		Lus10015293 [exp]	0	1
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Lus10020392 [exp]	1.4	0.9135
AT5G11900			Translation initiation factor ...		Lus10024986 [exp]	2.0	0.8951
AT2G18050		HIS1-3	histone H1-3 (.1.2)		Lus10014267 [exp]	2.4	0.8900
AT3G08890			Protein of unknown function, D...		Lus10022674 [exp]	3.3	0.8718
AT1G51200			A20/AN1-like zinc finger famil...		Lus10031833 [exp]	4.9	0.8655
AT1G76570			Chlorophyll A-B binding family...		Lus10015235 [exp]	6.7	0.8626
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Lus10027716 [exp]	6.8	0.9058
AT5G35732			unknown protein		Lus10001730 [exp]	6.9	0.9052
AT4G27130			Translation initiation factor ...		Lus10031550 [exp]	8.1	0.8532
AT5G38900			Thioredoxin superfamily protei...		Lus10034369 [exp]	8.4	0.8637

Compare expression of checked genes

Lus10015293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.