Plant FIBer expression Database

Lus10015294 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G28530 550 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025436
[exp]
501 / 3e-176 AT1G28530 203 / 6e-61 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G051000
[exp]
672 / 0 AT1G28530 676 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10015294 pacid=23178811 polypeptide=Lus10015294 locus=Lus10015294.g ID=Lus10015294.BGIv1.0 annot-version=v1.0
ATGACTTCTTCTTCTTATTCCCCGAGCTCCATTTCCCCACTTCAGTCGCCGCCGTTTCGCCACCTACGGAAACCACCTTCATCATCTCCATTTCCACTAC
CAAATATCCTGCCGTTGAAGTCAAGGAGCTACTACTTTTCAGCCGTCTCTTGCATATCCCCTCGGCACTTGGACCACAAAGAAATCCTCCGGCAAGTTGC
GGAATCGAACGACAGGATCCTCCCCTGCGTCAGAACATACGAGAACGACTTGGCTCGCCTCAGCTTAGTAGGTGCTGTCTCATTCGATCAGGCTCTCACC
GCCGCCGCCGCTGATGGAGGTCGAGCTGCGGCCGAGCATATCAAGGCCGGCGAGCCCGCTATGGTCGTCGAGACCGTTTTCCCTGGTCCCGCCGATGAGC
ACGCCACCGTGTCCACTCGATTGTTTTTGCCAGCTGACAAAGTGAGAGCAAAAGCTCGGAAGCTGAAATCCTCTCTAGACGATATTCTATCGGGAACGAG
TACTAAGAACATACTTGCCTTGACGTTTAGGCAAGTGGTCTTGCAAAAGCTATGGAACTTTGAACTAGTCCTGTTTAAGCCCGGGATTGAGCGAGATATG
GAGGATCTCGAGACTCCAAGAGAGGTTGATGCTGCCTCTTTAGTTATCAGCTCATCGGACTACAACGTTATCTCGATGCTAGCTGAAGCCGTTGCGAATG
CTGCTCTCCAGAGTACCGAAAGGAGTTTCCTCGATGGTTATGTAGGGAGAACTTCTTCCAACGGATTCTTCTCCTGGTTTGGGAAGAGGAAGCGGGTAGG
GTCGAAAGATTCTTCGGTTGTTATTTATCAGGTGCTTGAGGATGAGATTGTGGGCAATGTTGAGACTTTGCTTAAAGAGTTTAAGCTGAGCAAAGGGGAA
TTTAGCAGTATGAAAAGGAACCAAGGGTATAAGTGGTGGGCACCCTCAGCATATGCTAAGTTAAAAGGCCGCGGTGGCGCTGATTTCAGCGCTTGGACGA
GTGTGTTTGTCGCCATTTATCGGCTGATAGTTGATGCTGATAAACTCGGGGATGTTAAATTTGATGGGTGGACGAAGTTGCCAGACAATAAGTTTGAGGT
TTTTCTAACACACTCCCAAATGGTATGTTTGGCTGAAATACTGGATATCTACTATGAAGATGCGTATTCACTGCCCAGTAAAGATCTATCGTGTGGTTCT
GTTGCAGATGTTGCTAATTTGTCTGAAAGAAAGAAGAAGCCTGGATTGATGAAAACCCTTTCACTAGTCTTTGCAAGTGGAGTATGCCTCGTTACGTTAG
CGGCTATGAGTCAGTTTGGTTCCTATTTTCTACGTCAAGGACATAAGCATCCTCAACAACATACATCTCTTTTGGCGTCTGAAACGGAGTACATAACGAA
TGAATCTGCGGATCCGGAGCAGTTGAATAAGCTTTGTGTCTCGGTAATCAAACGGATAAAGGATGCCTATAACTGGCCGGAAGATATACTGACAGACCCG
AATTCGGGTGCTTGGATTGGTGAAATACCTGACTACCTGAAAATGAGCATGATTTCTGAATCCAAATCCGAAGCACCATCGACGAGTCTCGAAACCATGC
AAGACATCGACGAAAAGGTTAAATCATCCGTGCAAGACATCGCTAGCTACCAGGTAGTTATGTCGACGGACGGGAAACTGGTGGGATTCCAGCCGACAAG
TGGAGTAGGTGTGAACCAGTGGGCAGCCAATCCTTTGGCAAATGAACTCTACGGCGGAAGAAAGCTTTCACCCAATATCATCGAGCCGCGGCTAAAGGTG
AAGCTTCCGGACGAGGTAGTTGTTATCGAGCTGTTGATGTCGGTTAAGGATGCTCACTTTGCATTGGCACGACCATGCAAATGA
AA sequence
>Lus10015294 pacid=23178811 polypeptide=Lus10015294 locus=Lus10015294.g ID=Lus10015294.BGIv1.0 annot-version=v1.0
MTSSSYSPSSISPLQSPPFRHLRKPPSSSPFPLPNILPLKSRSYYFSAVSCISPRHLDHKEILRQVAESNDRILPCVRTYENDLARLSLVGAVSFDQALT
AAAADGGRAAAEHIKAGEPAMVVETVFPGPADEHATVSTRLFLPADKVRAKARKLKSSLDDILSGTSTKNILALTFRQVVLQKLWNFELVLFKPGIERDM
EDLETPREVDAASLVISSSDYNVISMLAEAVANAALQSTERSFLDGYVGRTSSNGFFSWFGKRKRVGSKDSSVVIYQVLEDEIVGNVETLLKEFKLSKGE
FSSMKRNQGYKWWAPSAYAKLKGRGGADFSAWTSVFVAIYRLIVDADKLGDVKFDGWTKLPDNKFEVFLTHSQMVCLAEILDIYYEDAYSLPSKDLSCGS
VADVANLSERKKKPGLMKTLSLVFASGVCLVTLAAMSQFGSYFLRQGHKHPQQHTSLLASETEYITNESADPEQLNKLCVSVIKRIKDAYNWPEDILTDP
NSGAWIGEIPDYLKMSMISESKSEAPSTSLETMQDIDEKVKSSVQDIASYQVVMSTDGKLVGFQPTSGVGVNQWAANPLANELYGGRKLSPNIIEPRLKV
KLPDEVVVIELLMSVKDAHFALARPCK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G28530 unknown protein Lus10015294
[exp]
0 1
AT1G66520 PDE194 pigment defective 194, formylt... Lus10010978
[exp]
1.7 0.8609
AT3G17970 ATTOC64-III translocon at the outer membra... Lus10009682
[exp]
2.4 0.8712
AT5G24650 Mitochondrial import inner mem... Lus10015593
[exp]
3.5 0.8223
AT1G72040 P-loop containing nucleoside t... Lus10008257
[exp]
4.5 0.8697
AT3G16290 EMB2083 embryo defective 2083, AAA-typ... Lus10011432
[exp]
8.5 0.8320
AT3G20320 ABCI15, TGD2 ATP-binding cassette I15, trig... Lus10007420
[exp]
8.5 0.8032
AT1G29370 Kinase-related protein of unkn... Lus10007339
[exp]
12.0 0.8208
AT5G01340 AtmSFC1 mitochondrial succinate-fumara... Lus10005045
[exp]
12.0 0.8070
AT1G79050 recA DNA recombination family ... Lus10026204
[exp]
13.4 0.8174
AT1G29370 Kinase-related protein of unkn... Lus10020762
[exp]
14.0 0.8089

Lus10015294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.