Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20160 212 / 8e-70 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) AT4G22380 211 / 2e-69 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) AT4G12600 207 / 4e-68 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) AT5G46020 147 / 4e-44 unknown protein AT5G08180 64 / 2e-12 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025435 [exp] 415 / 6e-147 AT4G22380 203 / 7e-66 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10017031 [exp] 223 / 5e-74 AT4G22380 220 / 2e-75 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10019420 [exp] 206 / 2e-64 AT5G55190 443 / 8e-159 RAN GTPase 3 (.1) Lus10043276 [exp] 205 / 5e-64 AT5G55190 428 / 9e-153 RAN GTPase 3 (.1) Lus10010993 [exp] 54 / 9e-09 AT5G08180 229 / 3e-78 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Lus10000421 [exp] 54 / 1e-08 AT5G08180 240 / 9e-83 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Lus10040161 [exp] 52 / 3e-08 AT5G08180 226 / 4e-77 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Lus10004366 [exp] 52 / 3e-08 AT5G08180 227 / 1e-77 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G116800 [exp] 218 / 5e-72 AT4G12600 216 / 3e-74 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Potri.019G087100 [exp] 214 / 2e-70 AT4G12600 213 / 9e-73 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Potri.004G051100 [exp] 185 / 1e-58 AT5G46020 153 / 4e-48 unknown protein Potri.011G060800 [exp] 181 / 3e-57 AT5G46020 130 / 4e-39 unknown protein Potri.008G110100 [exp] 56 / 3e-09 AT5G08180 225 / 8e-77 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0101 [flax] [poplar] PELOTA PF01248 [flax] [poplar] Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CL0101 [flax] [poplar] PF10252 [flax] [poplar] PP28 Casein kinase substrate phosphoprotein PP28
Representative CDS sequence Show only first row Show all	>Lus10015295 pacid=23178716 polypeptide=Lus10015295 locus=Lus10015295.g ID=Lus10015295.BGIv1.0 annot-version=v1.0 ATGGGTAGAGGAAAGTTCAAGGGGAAGCCTACTGGCCACCGCCACTTCTCGACTCCTGAAGAGATGCTTGCTGGAAGCTCTTCACGTCCGAAAACATTCA AACGGGTGGAAGCTGAATATGAGGAGGCAGAGGAAGCTGAAGAAGAATCAGGAGAGGAGTCTGGAGAGGAATCTGGAGATGAAGCAACTGATGAGAAGAG AAAAGGTACTGAGGGTTTGATCCAGATTGAGAATCCAAATATCGCTAAGCCGAAGAATGTCAAGGCGAGAGACCTTGATTTTGGGAAAACAACAGAACTT TCCAGGCGTGAAAGGGAGGAAATAGAGAAGCAGAGAGCACATGAGCGATACATGAGGCTCCAAGAGCAAGGCAAAACAGAACAAGCAAGGAAGGATTTAG AGCGATTGACTCTGATTCGCCAGCAGAGGGCCGAAGCTGCTAAGAAGCGAGAAGAGGAGAAGGCTGGTAATGTGTTTCAACATCTTCCAGCTGGAGACGC TGTGAACCCGAAAGCCTACCCGCTGGCCGATTCTCAGCTGACGATCACTATTCTCGACCTCGTTCAACAAGCTGCTAACTACAAGCAACTCAAGAAGGGA GCGAATGAAGCTACCAAGACATTGAATAGGGGAATCTCAGAGTTCGTGGTCATGGCTGCAGATACTGAGCCCCTCGAGATCCTTCTCCACCTTCCTTTGC TTGCTGAGGATAAGAACGTGCCTTATGTGTTTGTGCCATCAAAGCAAGCGCTGGGGAGAGCATGCGGTGTGACGAGGGCAGTCATTGCTTGTTCGGTGAC GACGAATGAAGGAAGTCAGTTGAAGTCGCAGATTCAACAACTGAAGGACGCGATTGAGAAGCTCTTGATCTAA
AA sequence Show only first row Show all	>Lus10015295 pacid=23178716 polypeptide=Lus10015295 locus=Lus10015295.g ID=Lus10015295.BGIv1.0 annot-version=v1.0 MGRGKFKGKPTGHRHFSTPEEMLAGSSSRPKTFKRVEAEYEEAEEAEEESGEESGEESGDEATDEKRKGTEGLIQIENPNIAKPKNVKARDLDFGKTTEL SRREREEIEKQRAHERYMRLQEQGKTEQARKDLERLTLIRQQRAEAAKKREEEKAGNVFQHLPAGDAVNPKAYPLADSQLTITILDLVQQAANYKQLKKG ANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRAVIACSVTTNEGSQLKSQIQQLKDAIEKLLI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10015295 [exp]	0	1
AT3G03490		AtPEX19-1, PEX1...	peroxin 19-1 (.1)		Lus10010463 [exp]	1.0	0.9006
AT4G26310			elongation factor P (EF-P) fam...		Lus10030360 [exp]	1.4	0.8643
AT5G11900			Translation initiation factor ...		Lus10013512 [exp]	1.7	0.8359
AT4G29170		ATMND1	Mnd1 family protein (.1.2)		Lus10002503 [exp]	2.8	0.8168
AT4G21720			unknown protein		Lus10017512 [exp]	4.0	0.7996
AT3G10620		ATNUDX26	nudix hydrolase homolog 26 (.1...		Lus10033839 [exp]	4.2	0.7849
AT2G36130			Cyclophilin-like peptidyl-prol...		Lus10021335 [exp]	4.5	0.8118
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Lus10026854 [exp]	10.6	0.8017
AT1G26660			Prefoldin chaperone subunit fa...		Lus10030428 [exp]	12.0	0.7800
AT3G58680		MBF1B, ATMBF1B	multiprotein bridging factor 1...		Lus10017945 [exp]	12.4	0.7796

Compare expression of checked genes

Lus10015295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.