Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18470 166 / 9e-49 SNI1 SUPPRESSOR OF NPR1-1, INDUCIBLE 1, negative regulator of systemic acquired resistance (SNI1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025429 [exp] 380 / 9e-132 AT4G18470 352 / 4e-118 SUPPRESSOR OF NPR1-1, INDUCIBLE 1, negative regulator of systemic acquired resistance (SNI1) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G062100 [exp] 206 / 8e-64 AT4G18470 372 / 1e-125 SUPPRESSOR OF NPR1-1, INDUCIBLE 1, negative regulator of systemic acquired resistance (SNI1) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015299 pacid=23178817 polypeptide=Lus10015299 locus=Lus10015299.g ID=Lus10015299.BGIv1.0 annot-version=v1.0 ATGGAATCCACCGACGGCAAAAGAAGAGGGAACAGAATAGTGGAAGAGAACTTCCTGGCGATTTTCGAGGCCGATGACTCCAGAGAAACCCGAGATAACC ACGACGGCAAAACAATCAACTGGGTTCCTATGAGAGAGTCATTGCTAAACCTTCTTCTGAGCTCAAGGAAGATACAGTACAAAAGCTTTATAAGGGATTG TTTGGCTGCGTTTTGTGGACTATTTCGTCCTCCTACTGCATCAGATGCTGATCTCGATGCCACCATGGATGTGGTGGAAGTATCAGAGAGCAGTGCTGCA GCAGATACTGTTTGGGCAGAAGTAAAAATTAATACTTGCACCGCATTGCAGAAACTTCTTGTAGTGATTATGGACTTTGATGTATCAAGGAAGGTAGCTG AAGCACAAGGTTCTACTACTAGAGCCGATGGCGTGAGAACACCTTTGGTTGAGCTTGTTCTGGACGAGCTAATTTATGACAGTGAGATGCTATCCCCATT TCTTCAGAGATTTACTGAACCAAAAGGGAAAAGTGAATTGATCTTGCAGTACTTTCAGAAGTACTCCGCAAAGCCTACCGTTCGGACTCGAAGATCTAAT AGCCCCCCTGAGGATCAAACAATTAGTGGGATCTTGAAAGGGTTTTCAAATGTCGCAAGCTGTAAAAGTATCGCTAAAAAGATAGGCACTGATGTCGTTC AGTTGCTTATAGCCCACGCTTTCCAGGAAGCTTTAGATCCAGCCAATTGGAAAGGAGCACTGTTTACCGCAGCAATGATCCTTTCAACTAAGACTTAG
AA sequence Show only first row Show all	>Lus10015299 pacid=23178817 polypeptide=Lus10015299 locus=Lus10015299.g ID=Lus10015299.BGIv1.0 annot-version=v1.0 MESTDGKRRGNRIVEENFLAIFEADDSRETRDNHDGKTINWVPMRESLLNLLLSSRKIQYKSFIRDCLAAFCGLFRPPTASDADLDATMDVVEVSESSAA ADTVWAEVKINTCTALQKLLVVIMDFDVSRKVAEAQGSTTRADGVRTPLVELVLDELIYDSEMLSPFLQRFTEPKGKSELILQYFQKYSAKPTVRTRRSN SPPEDQTISGILKGFSNVASCKSIAKKIGTDVVQLLIAHAFQEALDPANWKGALFTAAMILSTKT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18470		SNI1	SUPPRESSOR OF NPR1-1, INDUCIBL...		Lus10015299 [exp]	0	1
AT3G49030			FBD, F-box and Leucine Rich Re...		Lus10029424 [exp]	1.0	0.6377
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10025981 [exp]	14.9	0.6060
AT4G33920			Protein phosphatase 2C family ...		Lus10000700 [exp]	18.2	0.6060
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10004882 [exp]	21.1	0.6060
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10006277 [exp]	23.6	0.6060
AT5G51740			Peptidase family M48 family pr...		Lus10032437 [exp]	25.8	0.6060
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Lus10016711 [exp]	27.9	0.6060
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10017911 [exp]	29.8	0.6060
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10038371 [exp]	31.6	0.6060
AT3G06920			Tetratricopeptide repeat (TPR)...		Lus10038657 [exp]	33.3	0.6060

Compare expression of checked genes

Lus10015299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.