Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33990 193 / 5e-60 IQD9 IQ-domain 9 (.1) AT3G15050 163 / 2e-48 IQD10 IQ-domain 10 (.1) AT3G22190 100 / 2e-23 IQD5 IQ-domain 5 (.1.2) AT2G26180 99 / 5e-23 IQD6 IQ-domain 6 (.1) AT2G26410 94 / 3e-21 IQD4 IQ-domain 4 (.1) AT5G03040 87 / 7e-19 IQD2 IQ-domain 2 (.1.2.3) AT3G52290 86 / 2e-18 IQD3 IQ-domain 3 (.1) AT3G09710 85 / 4e-18 IQD1 IQ-domain 1 (.1.2) AT1G72670 84 / 9e-18 IQD8 IQ-domain 8 (.1) AT3G59690 72 / 1e-13 IQD13 IQ-domain 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025425 [exp] 509 / 0 AT2G33990 243 / 1e-79 IQ-domain 9 (.1) Lus10036508 [exp] 114 / 4e-28 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 110 / 2e-27 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10013362 [exp] 101 / 6e-24 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10013522 [exp] 95 / 2e-21 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10004107 [exp] 89 / 2e-19 AT3G22190 308 / 6e-101 IQ-domain 5 (.1.2) Lus10019916 [exp] 83 / 1e-17 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10026486 [exp] 82 / 6e-17 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10025593 [exp] 77 / 2e-15 AT3G59690 498 / 1e-172 IQ-domain 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G063200 [exp] 276 / 8e-92 AT2G33990 238 / 9e-78 IQ-domain 9 (.1) Potri.004G053000 [exp] 268 / 9e-89 AT2G33990 236 / 5e-77 IQ-domain 9 (.1) Potri.011G096500 [exp] 193 / 1e-59 AT3G15050 262 / 2e-87 IQ-domain 10 (.1) Potri.001G375700 [exp] 192 / 4e-59 AT3G15050 245 / 1e-80 IQ-domain 10 (.1) Potri.006G131100 [exp] 105 / 4e-25 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.010G218100 [exp] 105 / 5e-25 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.001G215200 [exp] 103 / 1e-24 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.006G226600 [exp] 103 / 1e-24 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.009G015800 [exp] 103 / 1e-24 AT3G22190 286 / 9e-93 IQ-domain 5 (.1.2) Potri.016G086300 [exp] 98 / 1e-22 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015300 pacid=23178735 polypeptide=Lus10015300 locus=Lus10015300.g ID=Lus10015300.BGIv1.0 annot-version=v1.0 ATGGGATCTGGAAACTGGATCAAGACAATGATGAACTTGAAGAAGGGGAAGAACGGGTATCCACAGCAACTCAAGGGTTCTTCTCCATCTGCGAAATCGA ATGGCTTCAGATTGAAGAAAGTTTCAACTAGTTGTGCAGATTTCCATGCCAAGTCCAAACTTCTCAACATACCAGTTGAAGATTTGGCTGCCACTCACAT TCAAACTGCATTCCGTGCATACAGAGCCAGACGAGCATTACGCCGCCTGAAAGGGACCGCGAAACTTCAGACCAGGACCAAGCATCAATCCATTGCAAAG CAAGCTAATTCGACATTGAACCACCTTCATCTGTGGAGCAGTATGCAGGCTCAGATCAGAACTCGCCGCCAGTTTATGGTGACCGAGGGTCGTTCAAAGC AGAAGAAGTTGGAGAATCAGCTTAAACTGGAGGCAAAGCTTCATGGTGTCGAGGTGGACTGGAATAGTGGATGTGAAACAATGGAGGAGATTCTTGCAAG AATACACCAGAGGGAAGAAGCAGCTGTGAAGAGGGAAAGAGCCATGGCGTATGCCTTCTCTCACCAGTGGAGGGCCAACTGCAATCAGAGCCTCGGTGGT TACGAAGTCGGGAAAGCGAACTGGGGATGGAGCTGGATGGACCGCTGGATCGCTGCTCGACCATGGGAAAGCCGTGTACCTACAAAGTCTACAACCATCA TTCCAAAGAAGTCTCAGAATCATAAGCAGGCTAATAACAAGGTTGGTAACAAGATTGCCACTACCTTTTCCCCTTCTACTGCTAAAACACCAGCTTCTTC CAAGCTCTCCTCCAATGGCAGTACCAAAGCCAGGAGATTAAGTTATCCGGTTACCGGGAAGCTATCTAGTACACTTGATCGGAGCCGAAAATCGGCAGAA ATGGAAGACATCAAACCAGGAGCAGCTTCTGCTGCTTCTTCTTCTGCTATCTTAGTCTCATGA
AA sequence Show only first row Show all	>Lus10015300 pacid=23178735 polypeptide=Lus10015300 locus=Lus10015300.g ID=Lus10015300.BGIv1.0 annot-version=v1.0 MGSGNWIKTMMNLKKGKNGYPQQLKGSSPSAKSNGFRLKKVSTSCADFHAKSKLLNIPVEDLAATHIQTAFRAYRARRALRRLKGTAKLQTRTKHQSIAK QANSTLNHLHLWSSMQAQIRTRRQFMVTEGRSKQKKLENQLKLEAKLHGVEVDWNSGCETMEEILARIHQREEAAVKRERAMAYAFSHQWRANCNQSLGG YEVGKANWGWSWMDRWIAARPWESRVPTKSTTIIPKKSQNHKQANNKVGNKIATTFSPSTAKTPASSKLSSNGSTKARRLSYPVTGKLSSTLDRSRKSAE MEDIKPGAASAASSSAILVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33990		IQD9	IQ-domain 9 (.1)		Lus10015300 [exp]	0	1
AT1G29200			O-fucosyltransferase family pr...		Lus10007290 [exp]	2.4	0.9287
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10021637 [exp]	2.4	0.9224
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Lus10005042 [exp]	4.0	0.9180
AT2G42320			nucleolar protein gar2-related...		Lus10011304 [exp]	4.6	0.9062
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10003188 [exp]	4.6	0.9207
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10034829 [exp]	5.0	0.9139
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Lus10008646 [exp]	5.7	0.8972
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Lus10035862 [exp]	8.5	0.9041
AT3G59110			Protein kinase superfamily pro...		Lus10001055 [exp]	10.0	0.9040
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Lus10033908 [exp]	10.2	0.8848

Compare expression of checked genes

Lus10015300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.