Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28960 360 / 7e-126 ATNUDX15, ATNUDT15 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5) AT2G33980 323 / 7e-111 ATNUDT22 nudix hydrolase homolog 22 (.1) AT5G45940 242 / 3e-80 AtNUDX11, ATNUDT11 Arabidopsis thaliana nudix hydrolase homolog 11, nudix hydrolase homolog 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025424 [exp] 467 / 5e-168 AT1G28960 379 / 3e-133 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5) Lus10041965 [exp] 272 / 1e-91 AT2G33980 255 / 2e-85 nudix hydrolase homolog 22 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G053100 [exp] 370 / 4e-130 AT1G28960 387 / 2e-136 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5) Potri.011G063300 [exp] 365 / 3e-128 AT1G28960 379 / 1e-133 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5) Potri.004G053200 [exp] 276 / 2e-93 AT1G28960 279 / 5e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5) Potri.004G053300 [exp] 262 / 8e-88 AT2G33980 271 / 1e-91 nudix hydrolase homolog 22 (.1) Potri.016G121500 [exp] 223 / 4e-72 AT1G28960 234 / 2e-76 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10015301 pacid=23178763 polypeptide=Lus10015301 locus=Lus10015301.g ID=Lus10015301.BGIv1.0 annot-version=v1.0 ATGATCTGGCTCCTCAGAACAAAGCTAGTACCTTTCTCATCATCATTGCCACTCATCTTCCCCAAAACCACAACGACGACGACGACGAACCACTCATTCC CAGTTATCTTCATGAACTCTACCGGATCCAACCGGCTGCTAGCCTTAGCACAGCAGCTCCGCCTCTACTCGCCGCCACCACCGCCGCCGGAGGAAATTGA CGAGGAGGAAACCGCCGGGAAAGTGACTACCCAAGTCGGATTCCAAGAATCCGCTACCCCGGTTGCCGATAGGTTCAGACCCAAAAGAGCGGCAGTCCTC ATTTGCATCTTCGAAGGCGATTCCGGCGAGTTCCGCGTCATTTTGACAAAGAGATCCTCCCAATTGTCCACTCACTCTGGTGAAGTTTCATTGCCTGGTG GGAAAGCTGAAGAGAGTGATAAAGATGATGGAGACACAGCAACTAGAGAAGCCAAAGAGGAAATTGGATTGGATCCTTCTCTTGTTGATGTCATTACAGT TCTGGAACCCTTCTTATCCAAGCACCTCTTGAGAGTAGTTCCAGTTGTTGGCATTCTAAGGGATCGGAAAGCATTCACTGCAGTACCAAATCCAGCTGAA GTCGAATCCATATTCGATGCTCCTTTGGAAATGTTCATCAAGGACGAAAACCGAAGGGTAGAAGAACGAGAGTGGATGGGCGAGAAGTATCTCATCCATT ACTTTGATTACGAAACGGGCGACAATAAGAAGTACGTAATCTGGGGATTGACTGCTGGCATTCTGATCAAAGCTGCATCAGTTGTCTACAATCGGCCTCC TGCGTTCTTGGAGCAGACACCCAAGTTCAAGCTCCCTCGCGATGTGAAAACCGGTACTGTGATGCGTTGA
AA sequence Show only first row Show all	>Lus10015301 pacid=23178763 polypeptide=Lus10015301 locus=Lus10015301.g ID=Lus10015301.BGIv1.0 annot-version=v1.0 MIWLLRTKLVPFSSSLPLIFPKTTTTTTTNHSFPVIFMNSTGSNRLLALAQQLRLYSPPPPPPEEIDEEETAGKVTTQVGFQESATPVADRFRPKRAAVL ICIFEGDSGEFRVILTKRSSQLSTHSGEVSLPGGKAEESDKDDGDTATREAKEEIGLDPSLVDVITVLEPFLSKHLLRVVPVVGILRDRKAFTAVPNPAE VESIFDAPLEMFIKDENRRVEEREWMGEKYLIHYFDYETGDNKKYVIWGLTAGILIKAASVVYNRPPAFLEQTPKFKLPRDVKTGTVMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10015301 [exp]	0	1
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Lus10037608 [exp]	1.4	0.8895
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035330 [exp]	3.7	0.8185
AT4G09830			Uncharacterised conserved prot...		Lus10028732 [exp]	5.9	0.8001
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10016960 [exp]	10.1	0.8112
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10020053 [exp]	10.7	0.8074
AT1G21830			unknown protein		Lus10025658 [exp]	11.6	0.7274
AT5G11090			serine-rich protein-related (....		Lus10001946 [exp]	13.0	0.8032
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Lus10003971 [exp]	13.4	0.7676
AT3G03860		ATAPRL5	APR-like 5 (.1)		Lus10020283 [exp]	16.9	0.7781
AT4G01575			serine protease inhibitor, Kaz...		Lus10030166 [exp]	17.7	0.7595

Compare expression of checked genes

Lus10015301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.