Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45930 587 / 0 CHLI-2, CHLI2 magnesium chelatase i2 (.1) AT4G18480 576 / 0 CHLI-1, CHL11, CH-42, CH42, CHLI1 CHLORINA 42, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G08520 183 / 6e-51 V157, ALB1, ALB-1V, PDE166, CHLD PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025423 [exp] 742 / 0 AT5G45930 638 / 0.0 magnesium chelatase i2 (.1) Lus10019033 [exp] 184 / 4e-51 AT1G08520 1163 / 0.0 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1) Lus10005013 [exp] 182 / 2e-50 AT1G08520 1146 / 0.0 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G063400 [exp] 646 / 0 AT5G45930 605 / 0.0 magnesium chelatase i2 (.1) Potri.004G053400 [exp] 622 / 0 AT5G45930 598 / 0.0 magnesium chelatase i2 (.1) Potri.009G049400 [exp] 180 / 6e-50 AT1G08520 604 / 0.0 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1) Potri.001G254304 [exp] 62 / 2e-11 AT1G08520 120 / 3e-32 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1) Potri.001G254308 [exp] 58 / 3e-10 AT1G08520 160 / 1e-46 PIGMENT DEFECTIVE EMBRYO 166, ALBINA 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01078 [flax] [poplar] Mg_chelatase Magnesium chelatase, subunit ChlI
Representative CDS sequence Show only first row Show all	>Lus10015302 pacid=23178725 polypeptide=Lus10015302 locus=Lus10015302.g ID=Lus10015302.BGIv1.0 annot-version=v1.0 ATGGCGTCGATACTGGGAAATTCTTCCGCCGCAATCTTATCGTCCAGACCCATCTGTTCTTCCACTTCCAAATCCTCTTCCTCCCTCCCTTCCCTCTCCC TACTCCCATCAGGGCAAAGCTACTGGAGGAAGCAGTACTGCAATGGAGGTGTCAAGAAAGGAAGGTCTCAGCTGCACATTGCTAACGTTGCCACCGAGAT TAACGCCGTGGAGCCGGCTGCAAGGGTTGCTGATAAGGAAAGCCAGAGGCCAGTGTATCCCTTTGCTGCAATAGTCGGACAAGATGAGATGAAACTCTGC CTCCTCTTGAACGTGATCGATCCCAAGATAGGAGGTGTGATGATAATGGGAGATAGAGGCACTGGAAAATCCACGACCGTGCGTTCATTGACCGATTTGC TCCCCGAAATCAGGGTGGTCTCGGGCGATCCTTACAACTCGGACCCCGAAGACCCTGAGGCCATGGGGATGGAAGTTCGAGAGAGCGTCAACAAGGGGAA AGAACTCACTGTCGTGCTTACCAAGATTAACATGGTTGACTTGCCATTAGGAGCTACTGAAGATAGAGTCTGTGGCACGATTGACATCGAGAAGGCGTTG ACCGAAGGTGTTAAGGCGTTCGAACCGGGACTTCTTGCTAAAGCGAACCGAGGGATTCTATACGTTGATGAAGTCAATCTTCTTGATGATCATTTGGTTG ATGTTCTTCTTGATTCCGCTGCCTCGGGATGGAACACGGTCGAGAGGGAAGGTATTTCGATCTCGCACCCTGCGCGGTTTATCCTGATCGGGTCCGGTAA TCCTGAAGAAGGAGAGCTCAGACCTCAGCTCCTTGATAGGTTTGGTATGCATGCACAGGTTGGGACGGTTAAAGATGCAGAGCTGAGGGTGCAGATTGTC GAGGAGAGGGCTCGATTCGACAGGAACCCTAAGGAGTTCCGCGGCTCTTACAAGGCGGAACAAGAGAAGCTCCAGCAACAGATCGACGCAGCTAGGGCGT GTCTCGGTTCTGTACAGATCGACCACGACCTGAAAGTCAAGATCTCGAAGGTATGCGCGGAGCTGCATGTCGTCGGATTGAGAGGAGACATTGTGACTAA TAGAGCTGCAAAGGCTCTTGCTTCACTGAAGGGCAGAGACAAAGTAACTCCAGAGGATATCGCCACTGTGATTCCCAACTGCTTGAGACACCGTCTTCGA AAGGATCCGCTCGAATCCATCGACTCCGGGTTGCTCGTGATCGAGAAGTTTTACGAGGTTTTCACCTGA
AA sequence Show only first row Show all	>Lus10015302 pacid=23178725 polypeptide=Lus10015302 locus=Lus10015302.g ID=Lus10015302.BGIv1.0 annot-version=v1.0 MASILGNSSAAILSSRPICSSTSKSSSSLPSLSLLPSGQSYWRKQYCNGGVKKGRSQLHIANVATEINAVEPAARVADKESQRPVYPFAAIVGQDEMKLC LLLNVIDPKIGGVMIMGDRGTGKSTTVRSLTDLLPEIRVVSGDPYNSDPEDPEAMGMEVRESVNKGKELTVVLTKINMVDLPLGATEDRVCGTIDIEKAL TEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISISHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVKDAELRVQIV EERARFDRNPKEFRGSYKAEQEKLQQQIDAARACLGSVQIDHDLKVKISKVCAELHVVGLRGDIVTNRAAKALASLKGRDKVTPEDIATVIPNCLRHRLR KDPLESIDSGLLVIEKFYEVFT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Lus10015302 [exp]	0	1
AT4G27700			Rhodanese/Cell cycle control p...		Lus10023243 [exp]	1.0	0.9595
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10019493 [exp]	3.0	0.9442
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10000110 [exp]	3.7	0.9381
AT5G06290		2CPB, 2-CysPrxB...	2-CYS PEROXIREDOXIN B, 2-cyste...		Lus10021295 [exp]	4.0	0.9439
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10043342 [exp]	4.2	0.9435
AT2G31890		ATRAP	RAP (.1)		Lus10033769 [exp]	4.6	0.9329
AT1G06680		PSII-P, OEE2, P...	OXYGEN-EVOLVING ENHANCER PROTE...		Lus10020717 [exp]	4.7	0.9471
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Lus10002315 [exp]	5.3	0.9429
AT4G01150			unknown protein		Lus10012645 [exp]	7.4	0.9436
AT4G17560			Ribosomal protein L19 family p...		Lus10023720 [exp]	8.8	0.9397

Compare expression of checked genes

Lus10015302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.