Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28680 382 / 1e-129 HXXXD-type acyl-transferase family protein (.1) AT2G23510 159 / 1e-43 SDT spermidine disinapoyl acyltransferase (.1) AT5G07080 151 / 9e-41 HXXXD-type acyl-transferase family protein (.1) AT3G47170 148 / 1e-39 HXXXD-type acyl-transferase family protein (.1) AT2G25150 147 / 3e-39 HXXXD-type acyl-transferase family protein (.1) AT3G62160 130 / 2e-33 HXXXD-type acyl-transferase family protein (.1) AT1G27620 128 / 2e-32 HXXXD-type acyl-transferase family protein (.1) AT5G41040 121 / 4e-30 HXXXD-type acyl-transferase family protein (.1.2) AT1G03390 120 / 1e-29 HXXXD-type acyl-transferase family protein (.1) AT5G63560 119 / 2e-29 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004527 [exp] 135 / 4e-35 AT3G62160 452 / 8e-158 HXXXD-type acyl-transferase family protein (.1) Lus10005439 [exp] 135 / 4e-35 AT5G41040 364 / 2e-122 HXXXD-type acyl-transferase family protein (.1.2) Lus10033079 [exp] 126 / 1e-31 AT1G03390 643 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10020331 [exp] 126 / 2e-31 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1) Lus10017744 [exp] 125 / 4e-31 AT1G03390 643 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10005659 [exp] 122 / 5e-30 AT5G17540 406 / 6e-139 HXXXD-type acyl-transferase family protein (.1) Lus10032019 [exp] 117 / 1e-28 AT5G41040 446 / 1e-154 HXXXD-type acyl-transferase family protein (.1.2) Lus10020330 [exp] 117 / 2e-28 AT5G17540 436 / 2e-150 HXXXD-type acyl-transferase family protein (.1) Lus10012552 [exp] 116 / 3e-28 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G053500 [exp] 427 / 4e-147 AT1G28680 601 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.019G126400 [exp] 201 / 3e-59 AT5G07080 374 / 9e-126 HXXXD-type acyl-transferase family protein (.1) Potri.006G157100 [exp] 134 / 2e-34 AT1G03390 627 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G158400 [exp] 134 / 2e-34 AT1G03390 625 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.002G032200 [exp] 132 / 1e-33 AT1G27620 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.001G326300 [exp] 131 / 1e-33 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.014G166600 [exp] 130 / 2e-33 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.005G230900 [exp] 130 / 4e-33 AT1G27620 607 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.017G068500 [exp] 125 / 9e-32 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.014G113600 [exp] 125 / 2e-31 AT3G62160 526 / 0.0 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10015303 pacid=23178739 polypeptide=Lus10015303 locus=Lus10015303.g ID=Lus10015303.BGIv1.0 annot-version=v1.0 ATGGAAGTGAAAATCATAGAAACGATCCAAATTCACCCTCACCATATCCCATTCTCACAAGACCATGCCCTCCCTCTCTCCATCATCGACACTGATCCAA ACCTCGACCACACTATCCGCTACGTCCGATTCTACGCCAACAAAAACCCAACAACCGTCGCCGGAACCTTCTCCGGAAGCCGCCCTTCCGATGTCATCGC CGCTGCATTGTCACACGCTCTCGTCCACTACTACCCTTTCGCTGGTCGCCTCCGCTTCATCGGTTCCCGCCTCGAATCCTTCTCTGGCGTTGACCAACTG GCCCTGCCGTTCGTCAACGCAACGGTCAATGCCACGTTGGAGGCGGCGATGATCCGACTCGAGAATCCGGTCGACTCGGAGTTTGTGAACCGGTTGGCGC CGGAACCAAGTCATGATGAGAGGCTGGCTCACCCGTTTATGGTTCAGGTTACGGAGTTCGAGTGTGGCGGGTTCGCTCTAGGGTCTGCAGTGCACCACGC GATGTGCGACGGGATGGGGGCCACACAGTTTTTTAACGCAGTGGCAGAGCTCGCTTGTGGGTCGGGTAGGATATCGGTTGAGCCGGTTTGGGAGCGGGGG AGTTTGCTCCGGCCGAGGGACCCGCCCCAGGTCGAGGGGTTGGTTAGGGAGGTTTTGTTGGGTGAGGGTGGGCCGGACAGGTCGACTTTGTTGGTCGAAC CGGTGGTTGGTGGGTTTGATAAAGTGGTTATGGAGTGTTTTGATGTTAAGGAAGAGTGGGTGGAGAAATTCAAGAAGGTGTTGGTTGAGAAGTGTGGTTC CAAGTTCACCACGTTTGAGGCTTTGGGTGCATTCATATGGCGGGCCAAAGTCAAAGCCTCCATCGTACCACCAAATGAGCTCGTGAAATTCACATACTCA ATCAACATCCGCAAATTAGCCAACTTCCCATCAACATACTACGGAAACGGCTGCGTTCCGATGCACGTCCAGCTCCGATCACAAGACTTATTAAGCCAGC CGATCTGGGAGACGGCGGAGCTCATCAAGCAGAGCAAAGCAAACGTTCAAAGCGACGTCGTTTCGTTCGTCGACTCTCTCGAGCTGCACCACCTCGGTCG GGCGACGTTGGGCCGGAGTAAGTGGGTTAGCGGGTTCACGGATTGGAGGCACTTGGGCCACTCGGGTCTGGACTTCGGGTGGGGCGGCCCAGTCTGCATT TACCCGCTTCCGATGACTCTGCTTGGGAGTGAGGAGCCTTGCTTTTTCTTGCCGGCGGCGGATGGTGACGGTGGCGGTGGCGGCAGTGGGTTTAAGGTGA TGGTGATGTTACGGCAGGGGTTCGTGGATGGGTTTAAGGCGGAGTTTGAGAAATTTCGCCGACAGGAATTTTGA
AA sequence Show only first row Show all	>Lus10015303 pacid=23178739 polypeptide=Lus10015303 locus=Lus10015303.g ID=Lus10015303.BGIv1.0 annot-version=v1.0 MEVKIIETIQIHPHHIPFSQDHALPLSIIDTDPNLDHTIRYVRFYANKNPTTVAGTFSGSRPSDVIAAALSHALVHYYPFAGRLRFIGSRLESFSGVDQL ALPFVNATVNATLEAAMIRLENPVDSEFVNRLAPEPSHDERLAHPFMVQVTEFECGGFALGSAVHHAMCDGMGATQFFNAVAELACGSGRISVEPVWERG SLLRPRDPPQVEGLVREVLLGEGGPDRSTLLVEPVVGGFDKVVMECFDVKEEWVEKFKKVLVEKCGSKFTTFEALGAFIWRAKVKASIVPPNELVKFTYS INIRKLANFPSTYYGNGCVPMHVQLRSQDLLSQPIWETAELIKQSKANVQSDVVSFVDSLELHHLGRATLGRSKWVSGFTDWRHLGHSGLDFGWGGPVCI YPLPMTLLGSEEPCFFLPAADGDGGGGGSGFKVMVMLRQGFVDGFKAEFEKFRRQEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28680			HXXXD-type acyl-transferase fa...		Lus10015303 [exp]	0	1
AT5G03080			Phosphatidic acid phosphatase ...		Lus10026489 [exp]	4.5	0.9210
AT1G62710		BETAVPE, BETA-V...	beta vacuolar processing enzym...		Lus10032236 [exp]	6.3	0.9336
AT3G18280			Bifunctional inhibitor/lipid-t...		Lus10029131 [exp]	6.3	0.9183
AT1G17620			Late embryogenesis abundant (L...		Lus10037638 [exp]	10.6	0.9274
AT5G03080			Phosphatidic acid phosphatase ...		Lus10019919 [exp]	14.4	0.9136
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10007640 [exp]	16.1	0.9065
AT4G15248	CO		B-box type zinc finger family ...		Lus10027151 [exp]	17.5	0.8932
AT1G17620			Late embryogenesis abundant (L...		Lus10015622 [exp]	18.5	0.9237
AT4G08810		SUB1	calcium ion binding (.1)		Lus10039175 [exp]	20.5	0.9149
AT2G47590		PHR2	photolyase/blue-light receptor...		Lus10007880 [exp]	20.7	0.8665

Compare expression of checked genes

Lus10015303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.