Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21750 189 / 1e-57 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT1G77510 185 / 8e-56 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT4G39490 46 / 7e-06 CYP96A10 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) AT4G39480 46 / 7e-06 CYP96A9 "cytochrome P450, family 96, subfamily A, polypeptide 9", cytochrome P450, family 96, subfamily A, polypeptide 9 (.1) AT2G23180 44 / 3e-05 CYP96A1 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) AT1G65340 42 / 0.0002 CYP96A3 "cytochrome P450, family 96, subfamily A, polypeptide 3", cytochrome P450, family 96, subfamily A, polypeptide 3 (.1) AT2G21910 42 / 0.0002 CYP96A5 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) AT1G24540 40 / 0.0007 CYP86C1 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025679 [exp] 253 / 2e-83 AT1G21750 482 / 8e-169 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10018156 [exp] 256 / 5e-83 AT1G21750 710 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10042721 [exp] 227 / 3e-70 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10029681 [exp] 221 / 2e-69 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10028047 [exp] 100 / 4e-24 AT2G21910 375 / 1e-125 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) Lus10003756 [exp] 89 / 1e-21 AT2G23180 219 / 1e-68 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10025678 [exp] 92 / 3e-21 AT4G39490 363 / 9e-121 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10015306 [exp] 91 / 7e-21 AT4G39490 342 / 3e-108 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10018160 [exp] 71 / 4e-15 AT2G23180 127 / 4e-45 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G082100 [exp] 216 / 1e-67 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.005G179000 [exp] 206 / 7e-64 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.005G094500 [exp] 55 / 1e-08 AT1G47620 372 / 7e-124 "cytochrome P450, family 96, subfamily A, polypeptide 8", cytochrome P450, family 96, subfamily A, polypeptide 8 (.1) Potri.001G397900 [exp] 53 / 5e-08 AT4G39490 480 / 6e-166 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.007G080300 [exp] 51 / 2e-07 AT4G39490 574 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.005G064400 [exp] 50 / 4e-07 AT4G39490 477 / 8e-165 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.008G125300 [exp] 50 / 5e-07 AT4G39490 410 / 4e-139 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G087000 [exp] 48 / 2e-06 AT2G23180 373 / 2e-125 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.015G086900 [exp] 45 / 3e-05 AT2G23180 455 / 2e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.015G132800 [exp] 41 / 0.0004 AT4G39490 589 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015305 pacid=23178779 polypeptide=Lus10015305 locus=Lus10015305.g ID=Lus10015305.BGIv1.0 annot-version=v1.0 ATGGTTGGGGTGTTCCCGAAGTTTTCCGGCGAGGAGTTTGAGAAGTTGCGCTCTGACTATGAATTTGGTCACAGTTCAAGTGCTAAGTTCCTTCCTCGTG GTGAATCTTCAGTGACTGGGCCGTTGGTTAGGCTGTTCAAGCCATTTGATGAGTTCTTTGTTGATTCTAAGGACTTTAGTGCGGATGCTCTGGAGAAGTT CGTTGAGGAGTCCAGCATACCCACCGTCACTGTGTTCAACAGTGACCCAACCAATCACCCATACGCCAAGTACCGGGAAGTCGCTGAACAATACAAGGGA CAAGGTATCATCTTTTTTATTGGAGACGTTGATGCCAGTCAAGGCGCTTTCCAGTTCTTTGGACTTAAAGAAGAACAAATTCCTCTTGTTATTGTACAAA CAAGCGATGGGCACAAGTTGTTCCCGTCTTCACTAATCCACCGCTCCGGTTTAAATTCCATCCAATATTTCCCCCAAACCTCTTCCAGCCTCCCAATGGA ATACAACGAAAACAAGAACTCGGCATGCTTACCGATGAAATGCCCGCTCGGCAGTGTCTCTGCCTCTACCGCTGTCCGACTACCAAACGCGAGCGACGGG CAAAGCCTCAATGCCTCGCACACGGTTCCATGCAACAATGAGCCAATGCAGCCAGGATAG
AA sequence Show only first row Show all	>Lus10015305 pacid=23178779 polypeptide=Lus10015305 locus=Lus10015305.g ID=Lus10015305.BGIv1.0 annot-version=v1.0 MVGVFPKFSGEEFEKLRSDYEFGHSSSAKFLPRGESSVTGPLVRLFKPFDEFFVDSKDFSADALEKFVEESSIPTVTVFNSDPTNHPYAKYREVAEQYKG QGIIFFIGDVDASQGAFQFFGLKEEQIPLVIVQTSDGHKLFPSSLIHRSGLNSIQYFPQTSSSLPMEYNENKNSACLPMKCPLGSVSASTAVRLPNASDG QSLNASHTVPCNNEPMQPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10015305 [exp]	0	1
AT3G29390		RIK	RS2-interacting KH protein (.1...		Lus10032979 [exp]	2.8	0.7703
					Lus10019215 [exp]	5.0	0.8089
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10019213 [exp]	6.9	0.7952
AT1G27750			nucleic acid binding (.1)		Lus10007756 [exp]	11.0	0.7386
AT3G49990			unknown protein		Lus10015447 [exp]	13.2	0.7805
AT2G27830			unknown protein		Lus10015082 [exp]	16.5	0.6951
AT3G45100		SETH2	UDP-Glycosyltransferase superf...		Lus10022925 [exp]	20.7	0.7333
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003747 [exp]	21.6	0.7612
AT3G59510			Leucine-rich repeat (LRR) fami...		Lus10019356 [exp]	22.6	0.6372
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10004002 [exp]	29.1	0.7220

Compare expression of checked genes

Lus10015305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.