Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39490 342 / 4e-108 CYP96A10 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) AT2G23180 339 / 5e-107 CYP96A1 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) AT4G39480 338 / 2e-106 CYP96A9 "cytochrome P450, family 96, subfamily A, polypeptide 9", cytochrome P450, family 96, subfamily A, polypeptide 9 (.1) AT2G21910 332 / 1e-104 CYP96A5 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) AT5G23190 328 / 2e-102 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT1G57750 323 / 2e-101 MAH1, CYP96A15 MID-CHAIN ALKANE HYDROXYLASE 1, "cytochrome P450, family 96, subfamily A, polypeptide 15", cytochrome P450, family 96, subfamily A, polypeptide 15 (.1.2) AT4G32170 319 / 2e-99 CYP96A2 "cytochrome P450, family 96, subfamily A, polypeptide 2", cytochrome P450, family 96, subfamily A, polypeptide 2 (.1) AT5G08250 308 / 2e-95 Cytochrome P450 superfamily protein (.1) AT4G39500 302 / 2e-93 CYP96A11 "cytochrome P450, family 96, subfamily A, polypeptide 11", cytochrome P450, family 96, subfamily A, polypeptide 11 (.1) AT1G47620 301 / 8e-93 CYP96A8 "cytochrome P450, family 96, subfamily A, polypeptide 8", cytochrome P450, family 96, subfamily A, polypeptide 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025678 [exp] 842 / 0 AT4G39490 363 / 9e-121 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10028047 [exp] 758 / 0 AT2G21910 375 / 1e-125 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) Lus10025677 [exp] 580 / 0 AT2G23180 361 / 1e-119 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10022277 [exp] 417 / 5e-137 AT4G39490 395 / 1e-132 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10022279 [exp] 416 / 1e-136 AT2G23180 449 / 4e-154 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10002527 [exp] 415 / 3e-136 AT2G23180 454 / 7e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10002525 [exp] 400 / 2e-130 AT4G39490 410 / 2e-138 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10003669 [exp] 396 / 7e-129 AT2G23180 440 / 4e-150 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10003756 [exp] 363 / 2e-120 AT2G23180 219 / 1e-68 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G397900 [exp] 417 / 4e-137 AT4G39490 480 / 6e-166 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.007G080300 [exp] 388 / 8e-126 AT4G39490 574 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G086900 [exp] 385 / 1e-124 AT2G23180 455 / 2e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.005G064400 [exp] 382 / 3e-123 AT4G39490 477 / 8e-165 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G132800 [exp] 347 / 4e-110 AT4G39490 589 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G087000 [exp] 341 / 5e-109 AT2G23180 373 / 2e-125 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.007G072100 [exp] 321 / 9e-100 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.005G092200 [exp] 322 / 1e-99 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.014G085800 [exp] 299 / 2e-91 AT2G45970 866 / 0.0 LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) Potri.009G043700 [exp] 297 / 3e-91 AT5G58860 827 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10015306 pacid=23178777 polypeptide=Lus10015306 locus=Lus10015306.g ID=Lus10015306.BGIv1.0 annot-version=v1.0 ATGTACGCCAAGGCGTACGAGAACATCGAAGAGGCGGCGGTTTACCGCTACCTCATGCCGGATTTCTGGTGGAAATTTCAAAGATGGGCCATGAATGGAG AAGAGAGGAAGTACAGGAAAGCGTTGGAGAAATTCGATGAATTCCTCTACGAGAGGATCAATGTCAATAGAAGGAGCCTTGCCAAAACATATGAAGGGGG AAATGATCATCAGTTCAACTTTCTGACATTTTTCATGGTGGAAGGTCGAGAACAGGGCGAGTCGGGAGGAGAAACCTGTAGAGTCGAGATGTCTGACAAG CTCATGAGAGATATGGCGTTCAACATGATCGTAGCGGGGAGAGACGCGGTCTCTATCAATCTATCCCGTCTCCTCTGGCTCATTGTTTCACACCCCAACG TCGAGGCAAAAATCTTCGATGAAATAGGTGTGAATTTTGGCAGAAACTGGAACAATTGGAGGCTCTTCAGTGATGAAGAGCTTAACCAGATGGCTTACTT GCATGCCACCGTGTGCGAGGCGCTAAGGCTTTACCCGCCATTCGCATTTGAGCATCGGACGGCTATAGAGGCAGACACACCCACCAATCTGCAAAGTGCA AACACAATAGCAGGTCTTCTCCTACTCCCACTCCTAGCAACCACTCTGGCTTACATCATCGGCGGCAGCGGCAATTACAATTTCTACAAGCTAATCTACG ACATCCTCCGCCGCCCATCCAAGCTTCCCCCCACCACCAGCGACCGCCTCAAGTCCTACGGCGGAACTCTACATTCGAGTCATCGAGTGCTCACCTGCGA TCCGAAAAACCTAGACCATATTTTCAACAAGCGCCACTCCAATTTCCCCAAAGGCCCCGAGTTCAAAGACAAGCTCGATGCCTTGGGGGAAGGCATCTTC GCTATGGATGGAGAATCCGGCCTCTCCCAGCGCCGGATCCTCCACTCGGTCTTCAACTCTCCACCATTTGAACAGCTTCTCAACACTTCCCTCCTCGAAA AGCTCGAATCCGGCATGTTCCCCGTCTTGGACCGTGCGGTTGGTGCACGTTCAGGAGAGGAGCTAGACATGCAGGACGTGTACAAGAGGTTCATGTTCGA CAGCATTTGCATGATGGTGCTCGGATATGATCCAAATTATCTCACTGTCGAATTACTCCTAGACGTCCACTACGCCAAGGCGTACGAGGACCTTGAGGAG GCGGCGGTTTACCGCTACCTCATGCCGGATTTCTGGTGGAAATTTCAGAGATGGGCCGGAATCGGAGAAGAGAGGAAGTACAAAAAAGCGCTGAAGAAAT TCGACGAATTCCTTTACGAGAGGATCAATGTCAAGAGAGGGAGCCTTTACAAAACAGATGAGGGGGGAAATGATCAGTTCGACTTTCTGACATTTTTCAT GGTGGAAGGTCGAGAACAGGGCGAGTCGGGAGGAGAAACCGGTAGAGTCGAGAAGTCAAACAAGGTCATGAGAGATATGGCGTTCAACATGATCGCAGCG GGGAGAGACACGGTCTCTATCAATCTATCCTGGCTGCTCTGGCTCATTGTTTCACACTCCAACGTCGAGACGAAAATCCTCGACGAAATAGGGGTGAATC TAGGCGGAAACCGCAACAGTTGGCGGCTCTTAACCGACGAAGAGCTTAACAATATGGTTTACTTGCATGCCACCGTGTGCGAGGCGCTGAGGCTCTACCC GCCGCTCGCATTTGAGCACCGGACAGCTATAGAGGCAGAGAGATTACCGAGCGGGCATTTTGTCGGGAAGAATGCGACGATTCTGTTTTCGATGTATTCC ATGGCGAGGATGGAAAATGTCTGGGGGCAAGATTGCATGGAGTTTAAACCGGAGCGGTGGATTAGCGAAGAAGGCGATAAGATTGTTCACGTCCCGTCGT ACAAATTCTCAGCGTTTCTGGCTGGACCTAGGGCTTGCTTGGGGAAGAAGATTGCTTTCTGGTATGCCAAACAAGTGACAAGTGCTTTGATTTATAACTA TAAGGTGGAGTTGATCGCAGGGCATCCTGTTGCGCCTGCAGTTTCGATTACGTTATTCATGAAAGATGGTCTGAAAGTTCGAGTCTCGAGGAGAAGCGGT AAGTACAAAGAACTCAAGCTAATGTACGACATCCTCCGCCTCCCATCCGAGCTCCACCGCACCATCACCAACCGCCTCAAGTCGTGTGGCGGCATGGACC AAACCACTTATCTACTCCTCACCTGCGATCCCAGAAACATAGACCACGTTTTCAACAAGCGCCACTCCAACTTCTCGAAAGGACCCGGGTTCCAAGACAA GCTCGAGAAGTTGTGGGAAGGCATCTTTGCTGCCGATGGCGAATCGGGCCTCTCCCAGCGCCGGATCCTTCACTCCATCTCCAATTCTGCGCCGTTTGAA CGGCTTCTCGAAACTTCCCTCCTCGAAAAGCTTGAATCCGGCCTCTTCCCCGTCCTGGATTCTAGATCTACTGACCGGTTTGTGGAGCTAGCATGCAGGA CGTGTACAAGAGGACAGTCGGGAGGAGAAAGCAGCCGGATCGGATGA
AA sequence Show only first row Show all	>Lus10015306 pacid=23178777 polypeptide=Lus10015306 locus=Lus10015306.g ID=Lus10015306.BGIv1.0 annot-version=v1.0 MYAKAYENIEEAAVYRYLMPDFWWKFQRWAMNGEERKYRKALEKFDEFLYERINVNRRSLAKTYEGGNDHQFNFLTFFMVEGREQGESGGETCRVEMSDK LMRDMAFNMIVAGRDAVSINLSRLLWLIVSHPNVEAKIFDEIGVNFGRNWNNWRLFSDEELNQMAYLHATVCEALRLYPPFAFEHRTAIEADTPTNLQSA NTIAGLLLLPLLATTLAYIIGGSGNYNFYKLIYDILRRPSKLPPTTSDRLKSYGGTLHSSHRVLTCDPKNLDHIFNKRHSNFPKGPEFKDKLDALGEGIF AMDGESGLSQRRILHSVFNSPPFEQLLNTSLLEKLESGMFPVLDRAVGARSGEELDMQDVYKRFMFDSICMMVLGYDPNYLTVELLLDVHYAKAYEDLEE AAVYRYLMPDFWWKFQRWAGIGEERKYKKALKKFDEFLYERINVKRGSLYKTDEGGNDQFDFLTFFMVEGREQGESGGETGRVEKSNKVMRDMAFNMIAA GRDTVSINLSWLLWLIVSHSNVETKILDEIGVNLGGNRNSWRLLTDEELNNMVYLHATVCEALRLYPPLAFEHRTAIEAERLPSGHFVGKNATILFSMYS MARMENVWGQDCMEFKPERWISEEGDKIVHVPSYKFSAFLAGPRACLGKKIAFWYAKQVTSALIYNYKVELIAGHPVAPAVSITLFMKDGLKVRVSRRSG KYKELKLMYDILRLPSELHRTITNRLKSCGGMDQTTYLLLTCDPRNIDHVFNKRHSNFSKGPGFQDKLEKLWEGIFAADGESGLSQRRILHSISNSAPFE RLLETSLLEKLESGLFPVLDSRSTDRFVELACRTCTRGQSGGESSRIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10015306 [exp]	0	1
					Lus10016903 [exp]	10.9	0.8474
AT1G31490			HXXXD-type acyl-transferase fa...		Lus10023806 [exp]	21.2	0.8427
AT3G14240			Subtilase family protein (.1)		Lus10013187 [exp]	23.8	0.8415
					Lus10030114 [exp]	25.8	0.8105
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10007294 [exp]	25.9	0.8415
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10027874 [exp]	28.0	0.7576
AT2G04480			unknown protein		Lus10032584 [exp]	30.0	0.8415
AT1G11080		SCPL31	serine carboxypeptidase-like 3...		Lus10011213 [exp]	43.8	0.7939
AT4G20860			FAD-binding Berberine family p...		Lus10038446 [exp]	46.5	0.7856
AT2G28790			Pathogenesis-related thaumatin...		Lus10040843 [exp]	46.8	0.8120

Compare expression of checked genes

Lus10015306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.