Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23180 220 / 3e-69 CYP96A1 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) AT4G39480 215 / 2e-67 CYP96A9 "cytochrome P450, family 96, subfamily A, polypeptide 9", cytochrome P450, family 96, subfamily A, polypeptide 9 (.1) AT4G39490 214 / 1e-66 CYP96A10 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) AT2G21910 206 / 4e-64 CYP96A5 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) AT1G47620 198 / 9e-61 CYP96A8 "cytochrome P450, family 96, subfamily A, polypeptide 8", cytochrome P450, family 96, subfamily A, polypeptide 8 (.1) AT1G57750 196 / 3e-60 MAH1, CYP96A15 MID-CHAIN ALKANE HYDROXYLASE 1, "cytochrome P450, family 96, subfamily A, polypeptide 15", cytochrome P450, family 96, subfamily A, polypeptide 15 (.1.2) AT1G65340 193 / 5e-59 CYP96A3 "cytochrome P450, family 96, subfamily A, polypeptide 3", cytochrome P450, family 96, subfamily A, polypeptide 3 (.1) AT4G39500 190 / 3e-58 CYP96A11 "cytochrome P450, family 96, subfamily A, polypeptide 11", cytochrome P450, family 96, subfamily A, polypeptide 11 (.1) AT5G52320 190 / 1e-57 CYP96A4 "cytochrome P450, family 96, subfamily A, polypeptide 4", cytochrome P450, family 96, subfamily A, polypeptide 4 (.1) AT4G32170 190 / 1e-57 CYP96A2 "cytochrome P450, family 96, subfamily A, polypeptide 2", cytochrome P450, family 96, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025677 [exp] 379 / 4e-131 AT2G23180 361 / 1e-119 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10018161 [exp] 303 / 2e-106 AT4G39480 204 / 5e-64 "cytochrome P450, family 96, subfamily A, polypeptide 9", cytochrome P450, family 96, subfamily A, polypeptide 9 (.1) Lus10028047 [exp] 300 / 3e-100 AT2G21910 375 / 1e-125 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1) Lus10025678 [exp] 298 / 1e-99 AT4G39490 363 / 9e-121 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10003756 [exp] 283 / 3e-97 AT2G23180 219 / 1e-68 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10015306 [exp] 290 / 7e-93 AT4G39490 342 / 3e-108 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10022277 [exp] 245 / 6e-79 AT4G39490 395 / 1e-132 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10002525 [exp] 243 / 9e-78 AT4G39490 410 / 2e-138 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Lus10002527 [exp] 239 / 8e-77 AT2G23180 454 / 7e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G080300 [exp] 238 / 6e-76 AT4G39490 574 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G086900 [exp] 236 / 1e-75 AT2G23180 455 / 2e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.005G064400 [exp] 234 / 2e-74 AT4G39490 477 / 8e-165 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.001G397900 [exp] 231 / 2e-73 AT4G39490 480 / 6e-166 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G087000 [exp] 202 / 3e-63 AT2G23180 373 / 2e-125 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.015G132800 [exp] 204 / 4e-63 AT4G39490 589 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.008G125300 [exp] 193 / 3e-59 AT4G39490 410 / 4e-139 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.003G129100 [exp] 191 / 1e-57 AT1G63710 823 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Potri.010G050100 [exp] 187 / 1e-56 AT1G24540 684 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.008G183300 [exp] 184 / 3e-55 AT1G24540 682 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10015307 pacid=23178782 polypeptide=Lus10015307 locus=Lus10015307.g ID=Lus10015307.BGIv1.0 annot-version=v1.0 ATGGCAGCGGAGGAGAACGACGAGTCAGGCGAAATCGGACAGTTTGGAAAGTCGGACAAGTTATTAAGAGACACGGCGTTCAACCTAATTGCGGCCGGTA GGGACACATTTCCCGTCACTCTGGTTTGGCTACTCTGGCTGGTCGCTTCAAACCCTAAAGTGGAGAAGAAAATCCTGGAAGAAATGAAAACGAATCTCGG AGAAACTTCCGGTAATTGGAAGTTTTTCAGCGAGGAGTTGAACAAGCTAGTGTACCTACACGGTGCGGTTTGTGAGGCGCTCCGGCTGTACCCGCCTGTG CCGTTTGATCACAGAACTGCGACAGAGGAGGAGACCTTACCTACTGGGCATGTCGTTAGGAAGAACAGGATGGTTCTCTTTTCGATATATTCGATAGGGA GGATGGAGGAGATTTGGGGGGAGGATTGGATGGAGTTCAAGCCGGAGCGATGGATCAACTCGGAAGGGAACAAGATTGTTCACGTCCCGTCGTACAAGTT CATGACGTTTGCTGCCGGGCCGAGATCTTGCTTGGGGAAGAAGATTTCTTTCTTGTATACCAAACAAGCGGCAAGTGCTTTGCTTTATAACTATAAGATG GAGTTGCTCGAAGGGCATCCTGTCGCGTCTGCGGTTTCCATTGTGCGCGGGAGCTAG
AA sequence Show only first row Show all	>Lus10015307 pacid=23178782 polypeptide=Lus10015307 locus=Lus10015307.g ID=Lus10015307.BGIv1.0 annot-version=v1.0 MAAEENDESGEIGQFGKSDKLLRDTAFNLIAAGRDTFPVTLVWLLWLVASNPKVEKKILEEMKTNLGETSGNWKFFSEELNKLVYLHGAVCEALRLYPPV PFDHRTATEEETLPTGHVVRKNRMVLFSIYSIGRMEEIWGEDWMEFKPERWINSEGNKIVHVPSYKFMTFAAGPRSCLGKKISFLYTKQAASALLYNYKM ELLEGHPVASAVSIVRGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10015307 [exp]	0	1
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10018162 [exp]	2.6	0.9123
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006307 [exp]	2.8	0.9046
AT4G33860			Glycosyl hydrolase family 10 p...		Lus10033786 [exp]	3.0	0.9056
AT4G39480		CYP96A9	"cytochrome P450, family 96, s...		Lus10018161 [exp]	5.3	0.9076
AT2G46640			unknown protein		Lus10005993 [exp]	9.8	0.8653
AT1G05140			Peptidase M50 family protein (...		Lus10035276 [exp]	12.7	0.8424
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Lus10031088 [exp]	16.4	0.8721
					Lus10014003 [exp]	19.1	0.8064
AT4G35640		ATSERAT3;2	serine acetyltransferase 3;2 (...		Lus10007424 [exp]	19.7	0.7360
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10022720 [exp]	24.4	0.8254

Compare expression of checked genes

Lus10015307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.