Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28690 627 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G08510 298 / 1e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 298 / 1e-92 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14820 291 / 8e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G44230 283 / 3e-87 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G20540 279 / 5e-87 MEF21 mitochondrial editing factor 21 (.1) AT4G37380 278 / 8e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13770 275 / 1e-84 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 277 / 6e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 270 / 1e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025420 [exp] 1060 / 0 AT1G28690 634 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005987 [exp] 303 / 2e-96 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024971 [exp] 296 / 2e-92 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 290 / 4e-90 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 290 / 5e-90 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 288 / 6e-89 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 289 / 1e-88 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026006 [exp] 285 / 3e-88 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 284 / 5e-88 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G054000 [exp] 733 / 0 AT1G28690 672 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G175900 [exp] 305 / 2e-97 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 300 / 6e-94 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 298 / 3e-92 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G104700 [exp] 297 / 4e-92 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G051300 [exp] 295 / 7e-92 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G217900 [exp] 290 / 6e-90 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.017G091600 [exp] 289 / 4e-89 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G086100 [exp] 284 / 6e-89 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G086200 [exp] 286 / 8e-88 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10015308 pacid=23178758 polypeptide=Lus10015308 locus=Lus10015308.g ID=Lus10015308.BGIv1.0 annot-version=v1.0 ATGCTTCGAGCTGCAAAGAACATCAATGGCGAAGCAATGAAGCTGAATCCGTATGACAATATGAATAACAGCACCAAACTCCTCGCAATCCGACCATTTC ATCTCTCACCAACTCGGTTCTTTAATTCCATCCCTCAGACGACTCCCCAACGCATACAATACACGATCAATCAAACACCAGCTACTCTGTCATCAGCTCT TCAGCATTACATCAATTCAACCGCTCCTGGCCATGGCCGGAAGATCCACGCCCACATTCTGAAGACAGGGTTCAAACCCAATACGAATATATCGATCAAA ATCCTCATACTTTACCTGAAAGCCGGGTGCTTGAAGTATGCCCGCCAGGTGTTCGACCAAATGCATCGGCCGACGCTCTCTGCTTACAATTATATGCTTG GTGGGTATTTGCAACAAGGGCTGGTCGAAGAAGCGATCTTCTTGGTCCGAAAGTTGCTTGTTGATAGCCAAGAAAGGCCTGATGGGTTTACTTTCTCCAT GATTCTGAAAGCTTCTAGTGTTGTTAGTAGTAGTGGCTGCTGCTGCAATGTTGTGCTGCCGAGGAGATTGTGGAGTATCGTTCATGGTCAGATTGTTAGG TTGGATATTGAGCCTGATGATGTTCTTTATACCGCGGTTGTTGATTCGTATGTCAAGGCTGGGAATGTTGGTTATGCAAGGAGAGTTTTTGACTTGATGA TGGATAGAAATGTTATATGTTCAACGTCGATGATATCTGGGTATATGAATTATGGATCTTTTGCAGAGGCTGAAGAGATATTCGAGAGAACGGAGAAGAA AGATATTGTAGTTTTCAATGCCATGATCGAAGGATATAGCAAGTCCGAGGGAACGGCTATGAAAGCGCTGGAGTACTACATTGATATGCAGAGGATTGGT TTTGGGCCTAACGTATCCACATTTGCTAGTGTCATTGGAGCTTGCTCTCTCCTGGCGGAAGTTGAGATTGGCGTAATGATTCAGAGTCAGGTTATGAAGA TCTGTTTTACAAACATAAAAATCGCAAGTGCTTTGGTTGACATGTATGCAAAATGTGGGAAGATAGAGGATGCGAGGAGAGTCTTTGATGACATGACACA GAAGAATGTGTTCTCTTGGAGTTCGATGATCGATGGATATGGCAAGAGTGGGGAACCGGACAAAGCACTCGAACTTTTCGGTCGGATGGAACAATTCGGT GGTGTCGAGCCAAACCATGTTACTTTCCTTGCGGCTATTTCGGCTTGTGGACATGGTGGCTTAGTTGCTAAAGGCCGAGAGATCTTTGATAGTATGGAGA GAGACTACTCTCTGAAACCGAGGATGGAGCATTATGCTTGTATTGTTGATCTCTTAGGACGAGCAGGGTGTTTGCAGGAAGCATGGGAGCTCGTGATGGG GATGCCCGAAAGACCGAACAGTGATGTTTGGGCATCCCTGTTGAATTCGTGTAATTTCCATGGCAGCGTCGAGATGGCAAGTGTAGCTGCGAATGAGCTC TTCAAACTGAATGCTAAAGAACGCCCTGGTGCATATGTTTCGTTTTCGAATACCTTAGCAGCAGCCGGGAAATGGGATAATGTCAGTCAACTCAGAGATG TCATGAAGGTAAGGGGAGTGTTGAAAGATACTGGTTCCAGTTGGGTTGGGACTGAATCTTTTCCATGA
AA sequence Show only first row Show all	>Lus10015308 pacid=23178758 polypeptide=Lus10015308 locus=Lus10015308.g ID=Lus10015308.BGIv1.0 annot-version=v1.0 MLRAAKNINGEAMKLNPYDNMNNSTKLLAIRPFHLSPTRFFNSIPQTTPQRIQYTINQTPATLSSALQHYINSTAPGHGRKIHAHILKTGFKPNTNISIK ILILYLKAGCLKYARQVFDQMHRPTLSAYNYMLGGYLQQGLVEEAIFLVRKLLVDSQERPDGFTFSMILKASSVVSSSGCCCNVVLPRRLWSIVHGQIVR LDIEPDDVLYTAVVDSYVKAGNVGYARRVFDLMMDRNVICSTSMISGYMNYGSFAEAEEIFERTEKKDIVVFNAMIEGYSKSEGTAMKALEYYIDMQRIG FGPNVSTFASVIGACSLLAEVEIGVMIQSQVMKICFTNIKIASALVDMYAKCGKIEDARRVFDDMTQKNVFSWSSMIDGYGKSGEPDKALELFGRMEQFG GVEPNHVTFLAAISACGHGGLVAKGREIFDSMERDYSLKPRMEHYACIVDLLGRAGCLQEAWELVMGMPERPNSDVWASLLNSCNFHGSVEMASVAANEL FKLNAKERPGAYVSFSNTLAAAGKWDNVSQLRDVMKVRGVLKDTGSSWVGTESFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28690			Tetratricopeptide repeat (TPR)...		Lus10015308 [exp]	0	1
AT3G04160			unknown protein		Lus10021982 [exp]	1.4	0.8727
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10000051 [exp]	2.0	0.8706
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10004303 [exp]	7.5	0.8611
AT5G46100			Pentatricopeptide repeat (PPR)...		Lus10013972 [exp]	8.1	0.8581
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10013264 [exp]	9.8	0.8533
AT5G48120			ARM repeat superfamily protein...		Lus10037557 [exp]	13.1	0.8102
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10000073 [exp]	14.5	0.8477
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10015584 [exp]	19.9	0.8586
AT4G13650			Pentatricopeptide repeat (PPR)...		Lus10018978 [exp]	22.4	0.8479
AT2G46050			Pentatricopeptide repeat (PPR-...		Lus10036375 [exp]	23.0	0.8480

Compare expression of checked genes

Lus10015308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.