Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34070 496 / 7e-177 TBL37 TRICHOME BIREFRINGENCE-LIKE 37 (.1) AT1G29050 493 / 2e-175 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT2G31110 398 / 2e-138 TBL40 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G42570 398 / 3e-138 TBL39 TRICHOME BIREFRINGENCE-LIKE 39 (.1) AT1G78710 355 / 2e-121 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2) AT2G30900 348 / 7e-119 TBL43 TRICHOME BIREFRINGENCE-LIKE 43 (.1) AT3G14850 346 / 5e-118 TBL41 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) AT5G58600 315 / 3e-105 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30010 301 / 6e-100 TBL45 TRICHOME BIREFRINGENCE-LIKE 45 (.1) AT5G06700 283 / 3e-90 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013929 [exp] 550 / 0 AT1G29050 519 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10000988 [exp] 550 / 0 AT1G29050 526 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10033617 [exp] 403 / 2e-140 AT2G42570 486 / 6e-173 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10002198 [exp] 401 / 2e-139 AT2G42570 494 / 1e-176 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10039559 [exp] 335 / 9e-114 AT1G29050 374 / 1e-128 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10024176 [exp] 328 / 3e-110 AT1G29050 366 / 5e-125 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10039557 [exp] 322 / 4e-108 AT1G29050 351 / 2e-119 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10031301 [exp] 321 / 1e-107 AT5G58600 452 / 1e-158 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10019774 [exp] 319 / 5e-107 AT1G29050 361 / 2e-123 TRICHOME BIREFRINGENCE-LIKE 38 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G064700 [exp] 527 / 0 AT1G29050 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.004G055000 [exp] 513 / 0 AT1G29050 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.019G090200 [exp] 429 / 1e-150 AT2G42570 507 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.013G118500 [exp] 414 / 1e-144 AT2G42570 512 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.011G106200 [exp] 405 / 3e-141 AT1G29050 416 / 4e-145 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201700 [exp] 394 / 9e-137 AT1G29050 403 / 5e-140 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.001G023900 [exp] 381 / 2e-131 AT1G29050 383 / 3e-132 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201600 [exp] 372 / 2e-128 AT1G29050 408 / 2e-142 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.004G135600 [exp] 361 / 7e-124 AT2G30900 416 / 1e-145 TRICHOME BIREFRINGENCE-LIKE 43 (.1) Potri.011G106300 [exp] 353 / 5e-121 AT3G14850 453 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10015309 pacid=23178745 polypeptide=Lus10015309 locus=Lus10015309.g ID=Lus10015309.BGIv1.0 annot-version=v1.0 ATGCCTAGTACAAACTACACTCATCATCAAATACCACTTTTGTCCCTAATCATCATCTCATCATTGCTTCTCCAGCAAACAGCCGCCAGAAGTCACAGAA CCAATGTGACCAAACCGGTCCGGAAGCAATCAACCTGCAACCTGTTCCAAGGGAGATGGAACATTGACAACAATTCGTACCCGCTCTACGATTCCTCGTC CTGCCCATACATCGACGACCAGTTCGCCTGCCTGAAGTTCGGCAGGCCTGACCGGGAGTACCTCAAGTACTCTTGGATGCCCGATTTGTGCACCCTGCCC CGGTTCGATGGGGTCGACTTCTTGTCGAGATTGGGAAGGACTTACAAGAAGATCATGTTTGTGGGTGATTCCCTGAGTTTGAACATGTGGGAATCTTTGA GTTGCATGATTCATGGTTCGGTCCCTGATTTGAAGACCAAGTTCTTCAGGACTGGCACTTTCTCCTATGTCACCTTTCTGGATTACGGTGTCTCGGTATA CATGTACCGAACGCCATATTTGGTGGACATAGTTCAAGAAAACGTCGGAAAAGTATTGGATTTGAATTCAATAAGAGCGGGGGATGCATGGAAGGGGATG GACCTCGTCATCTTCAATTCTTGGCATTGGTGGACTCACACTGGTGCCAAATCACAAGGCTGGGATTATATAAGGGATGGATCCTCACTGTACAAAGACA TGAACAGGCTAGATGCATTTAACAAAGGGTTAAACACATGGGCTCAATGGGTTGACAACAATGTCGACCCTGCCACTACCAAGGTCTTCTTCCAGGGGAT TTCACCTTCCCATTACCAGGGCCAGGAATGGAACCAACCAAAGAAGAACTGCAACGGAGAGGCAGAGCCCTTATCGGGCTCGACCTATCCGGCCGGTGCA CCGCCAGCTACCGCAGTGGTGAACAAAGTTCTTACGAGCATGCAGACACCAGTGTATCTACTAGACATAACCACATTGTCACAATTGAGAAAAGACGCAC ACCCTTCTGCCTACGGGGGAGGCCCGGGAACAGACTGCAGCCATTGGTGCCTCCCCGGATTGCCCGATACATGGAACCAGCTCCTGTATGCCGCTCTCAT CTCATGA
AA sequence Show only first row Show all	>Lus10015309 pacid=23178745 polypeptide=Lus10015309 locus=Lus10015309.g ID=Lus10015309.BGIv1.0 annot-version=v1.0 MPSTNYTHHQIPLLSLIIISSLLLQQTAARSHRTNVTKPVRKQSTCNLFQGRWNIDNNSYPLYDSSSCPYIDDQFACLKFGRPDREYLKYSWMPDLCTLP RFDGVDFLSRLGRTYKKIMFVGDSLSLNMWESLSCMIHGSVPDLKTKFFRTGTFSYVTFLDYGVSVYMYRTPYLVDIVQENVGKVLDLNSIRAGDAWKGM DLVIFNSWHWWTHTGAKSQGWDYIRDGSSLYKDMNRLDAFNKGLNTWAQWVDNNVDPATTKVFFQGISPSHYQGQEWNQPKKNCNGEAEPLSGSTYPAGA PPATAVVNKVLTSMQTPVYLLDITTLSQLRKDAHPSAYGGGPGTDCSHWCLPGLPDTWNQLLYAALIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34070		TBL37	TRICHOME BIREFRINGENCE-LIKE 37...		Lus10015309 [exp]	0	1
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10001316 [exp]	1.0	0.9560
AT3G53140			O-methyltransferase family pro...		Lus10023892 [exp]	3.2	0.9411
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028897 [exp]	6.0	0.9403
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Lus10003039 [exp]	6.9	0.9394
AT5G57850			D-aminoacid aminotransferase-l...		Lus10006441 [exp]	7.0	0.9372
AT3G04570	AT-hook	AHL19	AT-hook motif nuclear-localize...		Lus10006577 [exp]	7.7	0.9359
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10012548 [exp]	8.7	0.9389
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10002302 [exp]	11.0	0.9325
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10007305 [exp]	11.2	0.9384
AT1G78780			pathogenesis-related family pr...		Lus10039018 [exp]	11.8	0.9321

Compare expression of checked genes

Lus10015309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.