Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47990 44 / 3e-05 SWA1, EDA13, EDA19 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015340 [exp] 102 / 3e-25 AT2G47990 594 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Lus10008305 [exp] 84 / 2e-19 AT2G47990 358 / 1e-121 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Lus10035065 [exp] 83 / 2e-18 AT2G47990 528 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Lus10017890 [exp] 83 / 2e-18 AT2G47990 584 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135600 [exp] 45 / 1e-05 AT2G47990 614 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Potri.002G213500 [exp] 41 / 0.0004 AT2G47990 587 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015310 pacid=23178753 polypeptide=Lus10015310 locus=Lus10015310.g ID=Lus10015310.BGIv1.0 annot-version=v1.0 ATGCAGACGATCCTAAGTGAAATACCCCAAAACCCTCGTCGGTATTTCAAATCTAAATGTGAAGGGTATAACAAGGATAGCACCATGCGCGTATGCTATA CGTTTGATGATGATACTCCCGAGCAGAAAGAGTTCGAACAAATCTCTTTCAACAACTCTCAAATTGTATCGCTTCACGGCTTGCTCCGTGGTCTGAGTAA AGAGGAGAATGGAGGAACAAGTAGATACATATACGAAGAATACCACTGCAACTTAGAATTCTTCCTTGCAAGGTTTGTAGCACCCGCTCATCACGAGGCG TTTGCGAAACTCGTCATGAGATACGTTCGTTTAGAGAAAGTTAGAGTTGGAAGTGAATGCCGCGGCATGGTTGCATACCTGTGTAGGAAACTAAGTAGCA ACCCAAGCTCGACTTCCTCTAGATTCATCACACACTTGATGAGCTTTCTTCTTGCCACCAATTCCTCCATAACTGCAACTACATTCTGTGGATCCTTACT CCCAAGCACAGATGCAAGCGCCTCTTTGTGTCTGAACTTGTTAAGCAGCGCTTATCATGCTCTGCCAACTTCACCTTCTTCCTGCTCACCAAATAGTCCC CGTCATTAG
AA sequence Show only first row Show all	>Lus10015310 pacid=23178753 polypeptide=Lus10015310 locus=Lus10015310.g ID=Lus10015310.BGIv1.0 annot-version=v1.0 MQTILSEIPQNPRRYFKSKCEGYNKDSTMRVCYTFDDDTPEQKEFEQISFNNSQIVSLHGLLRGLSKEENGGTSRYIYEEYHCNLEFFLARFVAPAHHEA FAKLVMRYVRLEKVRVGSECRGMVAYLCRKLSSNPSSTSSRFITHLMSFLLATNSSITATTFCGSLLPSTDASASLCLNLLSSAYHALPTSPSSCSPNSP RH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10015310 [exp]	0	1
					Lus10021453 [exp]	1.0	0.9902
AT4G36950		MAPKKK21	mitogen-activated protein kina...		Lus10034246 [exp]	2.0	0.9657
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038525 [exp]	2.8	0.9009
AT5G19730			Pectin lyase-like superfamily ...		Lus10034981 [exp]	3.0	0.9401
AT5G25250			SPFH/Band 7/PHB domain-contain...		Lus10001944 [exp]	3.2	0.8803
AT5G42790		ARS5, ATPSM30, ...	ARSENIC TOLERANCE 5, proteasom...		Lus10007395 [exp]	3.9	0.8262
AT1G61420			S-locus lectin protein kinase ...		Lus10019600 [exp]	4.0	0.8716
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10016892 [exp]	4.6	0.8730
AT2G44820			unknown protein		Lus10026825 [exp]	6.0	0.8683
AT3G45070			P-loop containing nucleoside t...		Lus10003068 [exp]	6.5	0.8779

Compare expression of checked genes

Lus10015310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.