Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 171 / 9e-50 O-methyltransferase family protein (.1) AT4G35150 158 / 2e-45 O-methyltransferase family protein (.1) AT5G54160 132 / 2e-35 ATOMT1 O-methyltransferase 1 (.1) AT1G51990 118 / 5e-30 O-methyltransferase family protein (.1.2) AT1G77520 116 / 3e-29 O-methyltransferase family protein (.1) AT3G53140 113 / 2e-28 O-methyltransferase family protein (.1) AT1G21130 112 / 5e-28 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2) AT1G21100 112 / 6e-28 IGMT1 indole glucosinolate O-methyltransferase 1, O-methyltransferase family protein (.1) AT1G21110 110 / 4e-27 IGMT3 indole glucosinolate O-methyltransferase 3, O-methyltransferase family protein (.1) AT1G21120 108 / 1e-26 IGMT2 indole glucosinolate O-methyltransferase 2, O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033656 [exp] 307 / 7e-103 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10017699 [exp] 300 / 1e-99 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10013945 [exp] 272 / 3e-89 AT4G35160 181 / 1e-53 O-methyltransferase family protein (.1) Lus10018629 [exp] 263 / 2e-85 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1) Lus10001510 [exp] 259 / 4e-84 AT4G35160 197 / 1e-59 O-methyltransferase family protein (.1) Lus10018628 [exp] 250 / 3e-80 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10017691 [exp] 249 / 7e-80 AT4G35160 194 / 2e-58 O-methyltransferase family protein (.1) Lus10008538 [exp] 238 / 1e-75 AT4G35160 167 / 5e-48 O-methyltransferase family protein (.1) Lus10032304 [exp] 229 / 1e-72 AT4G35160 170 / 2e-49 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G059600 [exp] 402 / 5e-140 AT4G35160 196 / 3e-59 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 390 / 1e-135 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 322 / 7e-109 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 305 / 4e-102 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.004G050400 [exp] 305 / 4e-102 AT4G35160 191 / 2e-57 O-methyltransferase family protein (.1) Potri.011G059500 [exp] 303 / 4e-101 AT4G35160 177 / 6e-52 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 296 / 2e-98 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 292 / 5e-97 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 290 / 5e-96 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1) Potri.013G122400 [exp] 289 / 1e-95 AT4G35160 188 / 2e-56 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10015311 pacid=23178785 polypeptide=Lus10015311 locus=Lus10015311.g ID=Lus10015311.BGIv1.0 annot-version=v1.0 ATGGATCCATCATCTGACAAAGAACTCTTCAAAGCACAAACCCACATCTACAACAGAATCCTCACTTACATAAACTCGATGGCGCTCAAATCAGCAGTAG ATCTCAAAATCCCAGACATAATCCACGAGAACAACCAAAACCCCATGACGATCCCAGAGCTCCTCTCTTCTCTCAACATCCACCCGTCGAAATCAACCCA CCTCCATCGCCTGATGCGAATCCTGACCCAATCAGGATTCTTCAAACAAGTAGAATTATCCAGTTCCAGTGGCGGCTTAGCTTACTCTTTAACCCCATCT TCAGAGCTGTTAGTGAAATCCAACCCGAACTGTTTATCACCTTTCGTCACATCGTTGCTCCACCGTGATTTCGTGACTCCATGGCATGTAATGGGGGACT GGTTCAAGGATGGTGAAGAGTGTTCCAAGACCGGGTTTGAGAAGGGGAACGGGATGGCGTTCTGGGAGTATAACGAGCGGAACCCGGATTTCAACTTGCT GTTTAACGAGGCGATGGGGTGCGATTCGAGGATGATGAACTTGGTTGATTGTGGGTGTGTTTTCGACGGGGTTGACAGCTTGGTTGATGTTGGTGGTGGG AATGGGACTTTTGCTAAGATTGTGAAGAAATCTTATCCTGGGATTGTTTGTAAGGTGCTTGAGCTTCCTCAAGTTGTTGGGGAATTGGTTCTTGATGGCG GGGAAGAAAGTGGAGTTGAGTTTGTTGCTGGGGATATGTTTCAATATGTTCCTCCTGCTGATGCTGTCTTGCTCAAGCTGATAATGCACGGATGGAAAGA TGAAGAATGCATTCAAATCCTGAAGAAATGCAAGGAAGCAATACCAAGCAAAGGCAAAGTGATGATCATTGACATAGTGATCAACGAGGAGAAAGATGAA CATGAATTGAGTGGCACTAAGCTCTTGTTCGACATGTTGATGTTGATCGTTGTTAATGGCAAAGAAAGGACTGAGAAAGAATGGGAGAAATTGTTCTTGG AAGCTGGTTTTGATCACTATAAGATCACTCCTTTGTTTGGTCTTAGGTCTCTTATTGAGGTTTTCCCTTGA
AA sequence Show only first row Show all	>Lus10015311 pacid=23178785 polypeptide=Lus10015311 locus=Lus10015311.g ID=Lus10015311.BGIv1.0 annot-version=v1.0 MDPSSDKELFKAQTHIYNRILTYINSMALKSAVDLKIPDIIHENNQNPMTIPELLSSLNIHPSKSTHLHRLMRILTQSGFFKQVELSSSSGGLAYSLTPS SELLVKSNPNCLSPFVTSLLHRDFVTPWHVMGDWFKDGEECSKTGFEKGNGMAFWEYNERNPDFNLLFNEAMGCDSRMMNLVDCGCVFDGVDSLVDVGGG NGTFAKIVKKSYPGIVCKVLELPQVVGELVLDGGEESGVEFVAGDMFQYVPPADAVLLKLIMHGWKDEECIQILKKCKEAIPSKGKVMIIDIVINEEKDE HELSGTKLLFDMLMLIVVNGKERTEKEWEKLFLEAGFDHYKITPLFGLRSLIEVFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35160			O-methyltransferase family pro...		Lus10015311 [exp]	0	1
AT4G34131		UGT73B3	UDP-glucosyl transferase 73B3 ...		Lus10014083 [exp]	1.0	0.9766
AT4G27290			S-locus lectin protein kinase ...		Lus10038552 [exp]	2.0	0.9730
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10031146 [exp]	2.4	0.9663
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10004870 [exp]	3.0	0.9704
AT5G23160			unknown protein		Lus10017395 [exp]	4.9	0.9674
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10001491 [exp]	5.7	0.9613
AT4G19880			Glutathione S-transferase fami...		Lus10036209 [exp]	6.3	0.9669
AT2G26930		CMK, CMEK, ISPE...	PIGMENT DEFECTIVE 277, 4-\(cyt...		Lus10036098 [exp]	6.5	0.9626
AT4G06534			unknown protein		Lus10024806 [exp]	8.7	0.9484
AT3G51520			diacylglycerol acyltransferase...		Lus10039135 [exp]	8.8	0.9544

Compare expression of checked genes

Lus10015311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.