Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71930 47 / 4e-06 NAC VND7, ANAC030 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) AT3G04420 47 / 5e-06 NAC ANAC048 NAC domain containing protein 48 (.1.2) AT4G27410 46 / 1e-05 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT2G18060 45 / 2e-05 NAC ANAC037, VND1 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) AT4G36160 45 / 2e-05 NAC ANAC076, VND2 VASCULAR-RELATED NAC-DOMAIN 2, NAC domain containing protein 76 (.1) AT1G02230 43 / 0.0001 NAC ANAC004 NAC domain containing protein 4 (.1) AT1G02220 41 / 0.0006 NAC ANAC003 NAC domain containing protein 3 (.1) AT1G12260 40 / 0.001 NAC ANAC007, VND4, EMB2749 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) AT5G66300 40 / 0.001 NAC ANAC105, VND3 VASCULAR-RELATED NAC-DOMAIN 3, Arabidopsis NAC domain containing protein 105, NAC domain containing protein 105 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010098 [exp] 42 / 8e-05 AT4G01550 94 / 5e-23 NAC with Transmembrane Motif 2, NAC domain containing protein 69 (.1.2) Lus10017915 [exp] 43 / 0.0001 AT1G71930 314 / 4e-107 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Lus10022915 [exp] 43 / 0.0001 AT4G28530 274 / 7e-91 NAC domain containing protein 74 (.1.2) Lus10041822 [exp] 42 / 0.0003 AT2G18060 352 / 3e-120 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Lus10028372 [exp] 41 / 0.0004 AT2G18060 349 / 4e-119 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G179800 [exp] 52 / 7e-08 AT3G44350 81 / 6e-18 NAC domain containing protein 61 (.1.2) Potri.001G404100 [exp] 47 / 5e-06 AT4G27410 370 / 8e-129 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.019G083600 [exp] 45 / 1e-05 AT1G71930 320 / 4e-109 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.019G099800 [exp] 44 / 4e-05 AT5G24590 103 / 3e-24 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Potri.005G058900 [exp] 44 / 5e-05 AT5G64060 256 / 3e-82 NAC domain containing protein 103 (.1) Potri.007G014400 [exp] 43 / 0.0001 AT2G18060 427 / 1e-149 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Potri.005G116800 [exp] 42 / 0.0002 AT2G18060 441 / 2e-155 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Potri.002G061300 [exp] 41 / 0.0006 AT1G34190 432 / 3e-145 NAC domain containing protein 17 (.1) Potri.013G113100 [exp] 40 / 0.0007 AT1G71930 309 / 1e-104 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10015312 pacid=23178781 polypeptide=Lus10015312 locus=Lus10015312.g ID=Lus10015312.BGIv1.0 annot-version=v1.0 ATGGACCAGCAATCTTCCGCTGTTAAGCAAGGAGATCATCATGATCAGTCGCCGGGTAGTCCTCCGATCAACCTATTGAAAGACTCCCTTCCTTCAGGAT TTAAGCCTACGGAGACATATTTGGCTGAGTTGCTGGAACGCAAATTCGCGAGCAAGGATACTTCTCTGTTCGATTTCTACAGCTACGATCCTGAGGATTG GAATTTGGCTCCGGCACAAGAAAACATTCACCATCATGATGACGGGAATACATACGTATTCTCGCCCAGTAAAGCCAAATTTGCTGGCGGGGTCATCATT AGGGACACCCCAAGCGGCTTTTGGATGAGGACCGGAAGGTCGGCAACGGTGATCGAGGACGGCAAAGGAGAGCAATTGGGGTGCAAGGGCGTTCTAAACT TCTTCATCAAGAAGCCTGATGGGTATGATGAACAAGTGAGTGGTGGTAGAAGAGTCCCTAAGAGGAGACAGCTTCGAACAGAGGTGCAGACTTTGTGGCA AATGCATGAAATTTGTTTGATTCCCAAAGACAATGTTAATCCAGGGATGGCGTTGTGTGTGGCGTACAAAACTAAACCGGTGATTAAGAAGCCGAAGAAG AAGAAGAAGGTGAAAACTGGCGAGGACGATGCATCATCCACTGGCAGTTGGACCGACAGCGACTGGGATACCGATACCGATACCGATACCTCTGACTCTG AGGATGAGACCTAA
AA sequence Show only first row Show all	>Lus10015312 pacid=23178781 polypeptide=Lus10015312 locus=Lus10015312.g ID=Lus10015312.BGIv1.0 annot-version=v1.0 MDQQSSAVKQGDHHDQSPGSPPINLLKDSLPSGFKPTETYLAELLERKFASKDTSLFDFYSYDPEDWNLAPAQENIHHHDDGNTYVFSPSKAKFAGGVII RDTPSGFWMRTGRSATVIEDGKGEQLGCKGVLNFFIKKPDGYDEQVSGGRRVPKRRQLRTEVQTLWQMHEICLIPKDNVNPGMALCVAYKTKPVIKKPKK KKKVKTGEDDASSTGSWTDSDWDTDTDTDTSDSEDET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36160	NAC	ANAC076, VND2	VASCULAR-RELATED NAC-DOMAIN 2,...		Lus10015312 [exp]	0	1
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10033099 [exp]	1.0	0.9180
AT4G17250			unknown protein		Lus10028936 [exp]	1.4	0.8944
AT4G21865			unknown protein		Lus10014471 [exp]	4.2	0.8901
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10013150 [exp]	10.5	0.8006
AT3G60540			Preprotein translocase Sec, Se...		Lus10010009 [exp]	10.8	0.8842
AT2G20740			Tetraspanin family protein (.1...		Lus10018584 [exp]	12.8	0.8777
AT4G36195			Serine carboxypeptidase S28 fa...		Lus10028365 [exp]	13.9	0.8729
AT4G29850			Eukaryotic protein of unknown ...		Lus10016385 [exp]	14.4	0.8409
AT1G25275			unknown protein		Lus10006792 [exp]	14.8	0.8431
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10012921 [exp]	18.6	0.8572

Compare expression of checked genes

Lus10015312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.