Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04960 663 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 410 / 1e-133 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 398 / 2e-129 RLK receptor lectin kinase (.1) AT4G02410 395 / 4e-128 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 392 / 6e-127 Concanavalin A-like lectin protein kinase family protein (.1) AT1G15530 386 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 384 / 1e-123 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 379 / 8e-122 Concanavalin A-like lectin protein kinase family protein (.1) AT5G01550 358 / 1e-113 LECRKA4.2 lectin receptor kinase a4.1 (.1) AT3G59700 353 / 6e-112 LECRK1, ATHLECRK LECTIN-RECEPTOR KINASE 1, lectin-receptor kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025441 [exp] 1140 / 0 AT4G04960 763 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10018602 [exp] 552 / 0 AT4G04960 642 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 412 / 1e-134 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 404 / 1e-131 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 402 / 7e-131 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10010867 [exp] 402 / 2e-130 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 399 / 7e-130 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10040774 [exp] 395 / 5e-128 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004982 [exp] 395 / 6e-128 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G053100 [exp] 703 / 0 AT4G04960 735 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.004G044200 [exp] 700 / 0 AT4G04960 756 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G053200 [exp] 684 / 0 AT4G04960 716 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088600 [exp] 432 / 2e-142 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 431 / 5e-142 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 422 / 9e-139 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.006G088400 [exp] 416 / 5e-136 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.006G088648 [exp] 407 / 7e-134 AT2G37710 710 / 0.0 receptor lectin kinase (.1) Potri.016G101000 [exp] 409 / 2e-133 AT3G55550 704 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.008G058400 [exp] 404 / 8e-132 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10015313 pacid=23178821 polypeptide=Lus10015313 locus=Lus10015313.g ID=Lus10015313.BGIv1.0 annot-version=v1.0 ATGAACCACCGCCGGTCACCGATCACCATCCTGCTCCTCCTCCTCCTCCTCTTCTTCTTCCAACAAACATCAGCCGTCGATTTCATCTTCAACAGATTCA ACTCCACCGCCAACTCCACCACCAACCTCCTCCTCTACGGATCCGCCGCTTTCGACTCCCAAATCCTCACCCTCACCAACTCCACCACCTTCACAATCGG CCGTGCTCTGTTCCCGCAGAAGATCCGTACAAAGCCTGATCAAAACTCCTCTCATGTCCTCCCTTTCTCCACCTCGTTCATCTTCGCCATGGCTCCGTAC AAGGATACCTTACCGGGCCACGGACTGGTGTTCCTCTTCGTCCCGTTCACCGGAATCGCCGGTGCTTCATCTTCTCAAAACCTCGGGTTTCTCAATCGGA CGAACGACAACGATCTGAATGCTCACGTATTCGGCGTTGAGTTCGACGTCTTCGCCAACCAGGAGTTCAACGACATCGACGATAACCACGTCGGCATAGA TCTGAACTCGCTGACCTCCAGATTCGCGAATCCGGCCGGGTACTGGCTGGATGATTCGGGAGGAGGATCCAATTTCAAGCCACTGAAGTTGAACAGCGGT GAGAATTACCAGGTCTGGATCGACTATCGCGATGGCTCGATGAACGTGACGATGGCCAGAGCAGGTGATAGACGCCCGATTAGGCCGTTGCTGAACGTTT CAATCGATCTGTCGGAGGTTTTCGAGGAGGAGATGTACGTCGGATTCACTGCTGCGACTGGACGGTTAGTTCAGAGCCATAAGATTCTAGGGTGGAGCTT TAGCAATTCGAATTTCTCGCTCAGTGAAGGACTTTTAGTTACTGGATTGCCGTCGTTCGTTCTCGCGTCCGATTCGATTGTCAAATCGAAAGGATTCGTC GCCGGGGTTGCTGCAGGAAGCTTTGTAGTGATCTGTATTGGAATTTTGATTGCTGTTTGGCTAATTATGAGGAGGAAGAAGAAGAAGGATGTTGAGAAAG AGGAAATGGAGGATTGGGAATTGGAATACTGGCCGCACAGGATTTCTTACCAGGAGATTGAATCGGCGACGAAAGGATTCAGCGAAGAGAACGTCATCGG AGTCGGCGGGAACGGGAAGGTGTACAAGGGAGTTCTCGCCTCCGGCGGCAGCGGTGAGATGATCGCAGTCAAGCGGATCTCGCCGGAGAACGACGGGACG AGGGAATTTCTAGCGGAGATTGCTAGTTTAGGGAGATTGAAGCATAGGAATCTGGTTGGATTGAGAGGATGGTGCAAAAGGGAGAAAGGATCGTTTCTGT TAGTGTATGATTACATGGAGAACGGAAGTTTAGATCAATGGATATTTGATTCCGCAGATTCCGCTACCGGCGGAATCGGCGAGAAGTTTCTTAGTTGGGA TGATCGAATTCGGATCCTGACCGACGTGGCAGCCGGAATCCGGTACCTCCACGAAGGATGGGAGGCGAAAGTTCTCCACCGTGACATCAAGGCTAGCAAT GTCTTGCTAGACAAGGAAATGAATGGTCGGTTAGGCGATTTTGGGTTGGCCCGGATGCACGAGCACGGTCAGGTAGCTCGAACCACTCGAGTCGTGGGGA CGGCCGGGTATTTGGCTCCGGAAGTGATTCACACCGGTCGGGTTTCAACTCGGACTGATGTGTTCGGTTTCGGAATCTTGATCCTCGAAGTGGTCTCGGG TAGGAGGCCTATCGAGGGGAAGGTGACGTTGGTTGACGCGATGTGGGACCTTATGAGGGAAGGGAAGGTTATGGAATGTGTGGACCAGAGGGTTAGAGGT TCGAGTGGGGTCGATGAGGAGGAAGTGGAACGGGTGGTTCGGTTAGGGTTGGTATGCTCGCACCCGGAACCGAGTTCGCGGCCTACGATGAGGCAAGTGA TGAAGGTGTTGGAAGTTGGGAAGGTTAGTAGTGAGAATGAGGTGGCCGAGAGTGAAGACATGGACACGCATTTGCTACAACGGACAAGGATGGACGTGTG GATGGACCGGTACTCGAGGAGCGATCTCGGTCATGGGTGGGGATCGCACCCGACGATGGAGGATGTTCGGCCAACGCAGTCTACATCGTCGGCTTCCGGG TCGTGGACCACGACCATCATAGACGGTAGGTGA
AA sequence Show only first row Show all	>Lus10015313 pacid=23178821 polypeptide=Lus10015313 locus=Lus10015313.g ID=Lus10015313.BGIv1.0 annot-version=v1.0 MNHRRSPITILLLLLLLFFFQQTSAVDFIFNRFNSTANSTTNLLLYGSAAFDSQILTLTNSTTFTIGRALFPQKIRTKPDQNSSHVLPFSTSFIFAMAPY KDTLPGHGLVFLFVPFTGIAGASSSQNLGFLNRTNDNDLNAHVFGVEFDVFANQEFNDIDDNHVGIDLNSLTSRFANPAGYWLDDSGGGSNFKPLKLNSG ENYQVWIDYRDGSMNVTMARAGDRRPIRPLLNVSIDLSEVFEEEMYVGFTAATGRLVQSHKILGWSFSNSNFSLSEGLLVTGLPSFVLASDSIVKSKGFV AGVAAGSFVVICIGILIAVWLIMRRKKKKDVEKEEMEDWELEYWPHRISYQEIESATKGFSEENVIGVGGNGKVYKGVLASGGSGEMIAVKRISPENDGT REFLAEIASLGRLKHRNLVGLRGWCKREKGSFLLVYDYMENGSLDQWIFDSADSATGGIGEKFLSWDDRIRILTDVAAGIRYLHEGWEAKVLHRDIKASN VLLDKEMNGRLGDFGLARMHEHGQVARTTRVVGTAGYLAPEVIHTGRVSTRTDVFGFGILILEVVSGRRPIEGKVTLVDAMWDLMREGKVMECVDQRVRG SSGVDEEEVERVVRLGLVCSHPEPSSRPTMRQVMKVLEVGKVSSENEVAESEDMDTHLLQRTRMDVWMDRYSRSDLGHGWGSHPTMEDVRPTQSTSSASG SWTTTIIDGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04960			Concanavalin A-like lectin pro...		Lus10015313 [exp]	0	1
AT4G16380			Heavy metal transport/detoxifi...		Lus10039073 [exp]	1.7	0.8688
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10016960 [exp]	4.2	0.8581
AT3G52470			Late embryogenesis abundant (L...		Lus10021286 [exp]	5.3	0.8584
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10010728 [exp]	10.6	0.7991
AT5G10840			Endomembrane protein 70 protei...		Lus10000222 [exp]	16.5	0.8257
AT4G29680			Alkaline-phosphatase-like fami...		Lus10008562 [exp]	16.7	0.8225
AT2G46620			P-loop containing nucleoside t...		Lus10030220 [exp]	17.7	0.8381
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10020241 [exp]	18.0	0.8078
AT1G36370		SHM7	serine hydroxymethyltransferas...		Lus10019942 [exp]	20.4	0.8062
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10020411 [exp]	28.7	0.7523

Compare expression of checked genes

Lus10015313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.