Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58950 297 / 2e-97 Protein kinase superfamily protein (.1) AT3G46930 245 / 7e-78 Protein kinase superfamily protein (.1) AT1G62400 194 / 2e-59 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT4G31170 148 / 2e-42 Protein kinase superfamily protein (.1.2.3.4) AT5G50180 144 / 2e-40 Protein kinase superfamily protein (.1) AT3G27560 144 / 3e-40 ATN1 Protein kinase superfamily protein (.1) AT5G40540 141 / 4e-39 Protein kinase superfamily protein (.1) AT2G24360 140 / 2e-38 Protein kinase superfamily protein (.1) AT5G01850 132 / 9e-36 Protein kinase superfamily protein (.1) AT2G17700 122 / 5e-31 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025442 [exp] 553 / 0 AT5G58950 510 / 2e-178 Protein kinase superfamily protein (.1) Lus10011173 [exp] 362 / 3e-123 AT5G58950 567 / 0.0 Protein kinase superfamily protein (.1) Lus10015436 [exp] 358 / 6e-122 AT5G58950 572 / 0.0 Protein kinase superfamily protein (.1) Lus10020018 [exp] 192 / 2e-58 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10015541 [exp] 193 / 1e-55 AT1G62400 623 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10042122 [exp] 178 / 7e-53 AT1G62400 404 / 7e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10020374 [exp] 144 / 1e-39 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Lus10009550 [exp] 148 / 2e-39 AT5G16730 571 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10035233 [exp] 141 / 4e-39 AT5G50180 567 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G085300 [exp] 325 / 1e-108 AT5G58950 604 / 0.0 Protein kinase superfamily protein (.1) Potri.005G082200 [exp] 320 / 1e-106 AT5G58950 607 / 0.0 Protein kinase superfamily protein (.1) Potri.012G080000 [exp] 196 / 3e-60 AT1G62400 405 / 9e-142 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.015G075200 [exp] 194 / 3e-59 AT1G62400 404 / 2e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.011G022800 [exp] 193 / 8e-59 AT1G62400 613 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.004G001900 [exp] 192 / 1e-58 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.018G001800 [exp] 150 / 4e-42 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.006G280000 [exp] 149 / 2e-41 AT4G31170 677 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.006G279900 [exp] 145 / 3e-40 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001900 [exp] 145 / 6e-40 AT2G24360 648 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10015314 pacid=23178773 polypeptide=Lus10015314 locus=Lus10015314.g ID=Lus10015314.BGIv1.0 annot-version=v1.0 ATGGAGGATTCGAATTCATGGCTGCGGCGGACGAAGTACTCCCACACGGTCTGCCACCGATTCGACACATCAAAGCTGGCAGCTTACCTTTCTTCCGACG CCGGAAACGACGTTGTTCCGATTAGGGTTTACTCGCAGATTCAGGTGAATCCGGTGATCAACAAGCAGAGATCGGTATCGCCATCGCCGCAGATTACTAA AGTTCCGGATTCGTTCAAGGATGCTAAGAAGACGATCAAGAGGCGGCATTCGACTCCGAATCCTAGGATGAGGAAGGATCATCATCATCATCAAGAGCCT AGCAGCAACGGGAAAGGAGGAGGAGGGATTATGAACAAATGGTTTCATCACGGGGGGAAGCAGCAAGAAGAATCGTTGAAGCAGCTGAAGAAGAATAAGA GAGGTGGGAAAGTGAATTCTGTGGAGGATTCTGAAGAATGTTGTAGTAGTAGTCGTAGTCGTGTTGATATGTCTAAGCTGTTCATTGGTTTGCGATTTGC TCATGGAGCTCACAGCAGGCTGTACCATGGGATTTACAATGATCAGCCTGTTGCTGTTAAGATTATTAGGGAGCCTGATGATGACGATAATGGAGCTTTG GGTGTCAGGTTGAAGAACCAGTTTGATCGGGAGGTCTCCCTTTTGACCCGCCTCTCCCATCCTAATGTCATCAAGTTGGTGGCAGCTTGCAAGAAGACAC CGGTATACTGCGTAATAACTGAGTATCTATCGGAGGGTTCACTGAGAGCATACTTGCACAAGCTGGAGCACAAGTCTTTGGCTATGGAGAAGCTCATAGC CTTTGCACTGGACATTGCTCGCGGGATGGAGTACATACACTCTCGTGGTGTCATCCACCGCGATCTTAAGCCGGAGAACATTCTGATCGACGAGGATTCC CACCTCAAGATTGCCGATTTCGGTATAGCCTGCGAGGAGTCTTGCTGCGACAAGTTGGCCGCATTTTAA
AA sequence Show only first row Show all	>Lus10015314 pacid=23178773 polypeptide=Lus10015314 locus=Lus10015314.g ID=Lus10015314.BGIv1.0 annot-version=v1.0 MEDSNSWLRRTKYSHTVCHRFDTSKLAAYLSSDAGNDVVPIRVYSQIQVNPVINKQRSVSPSPQITKVPDSFKDAKKTIKRRHSTPNPRMRKDHHHHQEP SSNGKGGGGIMNKWFHHGGKQQEESLKQLKKNKRGGKVNSVEDSEECCSSSRSRVDMSKLFIGLRFAHGAHSRLYHGIYNDQPVAVKIIREPDDDDNGAL GVRLKNQFDREVSLLTRLSHPNVIKLVAACKKTPVYCVITEYLSEGSLRAYLHKLEHKSLAMEKLIAFALDIARGMEYIHSRGVIHRDLKPENILIDEDS HLKIADFGIACEESCCDKLAAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58950			Protein kinase superfamily pro...		Lus10015314 [exp]	0	1
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Lus10027083 [exp]	1.4	0.8502
AT5G11090			serine-rich protein-related (....		Lus10001946 [exp]	2.0	0.8544
AT1G13900			Purple acid phosphatases super...		Lus10037091 [exp]	2.0	0.8269
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10020411 [exp]	2.6	0.8166
AT3G03860		ATAPRL5	APR-like 5 (.1)		Lus10020283 [exp]	4.5	0.8253
AT1G36370		SHM7	serine hydroxymethyltransferas...		Lus10015471 [exp]	4.6	0.8305
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10031797 [exp]	8.8	0.8038
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10017277 [exp]	8.9	0.8084
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Lus10037608 [exp]	10.0	0.8058
AT2G30690			Protein of unknown function, D...		Lus10033854 [exp]	10.1	0.7086

Compare expression of checked genes

Lus10015314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.