Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28280 156 / 5e-47 VQ motif-containing protein (.1.2) AT3G15300 92 / 1e-22 VQ motif-containing protein (.1) AT2G33780 91 / 4e-22 VQ motif-containing protein (.1) AT5G53830 74 / 1e-15 VQ motif-containing protein (.1) AT1G80450 41 / 0.0002 VQ motif-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025443 [exp] 197 / 9e-64 AT1G28280 154 / 2e-47 VQ motif-containing protein (.1.2) Lus10041929 [exp] 86 / 9e-20 AT1G28280 155 / 7e-47 VQ motif-containing protein (.1.2) Lus10005543 [exp] 84 / 3e-19 AT5G53830 154 / 4e-46 VQ motif-containing protein (.1) Lus10026247 [exp] 42 / 0.0002 AT1G80450 83 / 5e-20 VQ motif-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G053700 [exp] 161 / 2e-48 AT1G28280 213 / 6e-69 VQ motif-containing protein (.1.2) Potri.004G044800 [exp] 153 / 2e-45 AT1G28280 223 / 1e-72 VQ motif-containing protein (.1.2) Potri.011G118200 [exp] 118 / 3e-32 AT1G28280 184 / 6e-58 VQ motif-containing protein (.1.2) Potri.001G399100 [exp] 114 / 8e-31 AT1G28280 190 / 2e-60 VQ motif-containing protein (.1.2) Potri.006G266600 [exp] 39 / 0.0009 AT1G80450 61 / 6e-12 VQ motif-containing protein (.1) Potri.004G134200 [exp] 39 / 0.0009 AT5G08480 150 / 1e-46 VQ motif-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10015315 pacid=23178738 polypeptide=Lus10015315 locus=Lus10015315.g ID=Lus10015315.BGIv1.0 annot-version=v1.0 ATGGAGAATTCCTCCCCAAGATTCCACCATCAAGACAGCCGGAATCACCCGCCGCCGCCGCAACAATATACCAGCAGTACTAGCAGCGCCACTTCCTCCT CCAACCACCACCACGCGCCGCCGCCGCCTCCTCCTCCAACTCCGCCACCGCAGTCCCCACGCCCAATCGCCAGATCCGAATCCCTGAACCCGTACCCGAC CACTTTCGTCCAGGCCGACACCTCCTCCTTCAAGCAAGTCGTCCAAATGCTCACCGGTTCCCCCAAACCCGACCCGAAACCCGCGATCAAATCCATCCCG ATCAAGAGAAACCAATCCTCCTCCGGATTCAAGCTGTACGAGCGGAGGAACTCGCTCAAGAACCTCAGGATCAACCCGCTCAACCCTTTCCTCGCCGGAT CCGGATTCCCTTCGCCCCGAAATCAACAACCCGAGATCCTCTCCCCTAGCATCCTCGATTTCCCAGCTCTAGCCCTCAGCCCCGTCACCCCGTTGATACC CGACCCGTTCGATCGGTCAGGAACTTCAGGATCCGGATTCGTCAGCGGCGGCGCTACTCCGGCGAGAAATCTCATGGAAACGGAGGATGAGGAGGAAGAA AAGAAGGCGATTAAGGAGAGGGGATTTTATCTACACTGTTCGCCGGCGACGACGCCGAGAGAAGCGGAGCCGCCGCGGTTGTTGCCGCTCTTTCCGGTGA CGTCTCCCAGAGTCTCAGCTGGTTCAGCTAGTGCTTCGCCCTAA
AA sequence Show only first row Show all	>Lus10015315 pacid=23178738 polypeptide=Lus10015315 locus=Lus10015315.g ID=Lus10015315.BGIv1.0 annot-version=v1.0 MENSSPRFHHQDSRNHPPPPQQYTSSTSSATSSSNHHHAPPPPPPPTPPPQSPRPIARSESLNPYPTTFVQADTSSFKQVVQMLTGSPKPDPKPAIKSIP IKRNQSSSGFKLYERRNSLKNLRINPLNPFLAGSGFPSPRNQQPEILSPSILDFPALALSPVTPLIPDPFDRSGTSGSGFVSGGATPARNLMETEDEEEE KKAIKERGFYLHCSPATTPREAEPPRLLPLFPVTSPRVSAGSASASP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28280			VQ motif-containing protein (....		Lus10015315 [exp]	0	1
AT1G57680			unknown protein		Lus10008842 [exp]	1.4	0.8258
AT3G62580			Late embryogenesis abundant pr...		Lus10025037 [exp]	4.9	0.7952
AT1G28280			VQ motif-containing protein (....		Lus10025443 [exp]	6.9	0.6843
AT4G35070			SBP (S-ribonuclease binding pr...		Lus10014118 [exp]	8.7	0.7657
AT3G53390			Transducin/WD40 repeat-like su...		Lus10000150 [exp]	19.5	0.6977
AT1G11050			Protein kinase superfamily pro...		Lus10012701 [exp]	20.2	0.7619
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10043076 [exp]	26.5	0.7240
AT3G52710			unknown protein		Lus10022708 [exp]	30.7	0.7193
AT4G17080			Histone H3 K4-specific methylt...		Lus10042858 [exp]	33.6	0.7378
AT1G03350			BSD domain-containing protein ...		Lus10042670 [exp]	34.3	0.7456

Compare expression of checked genes

Lus10015315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.