Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33835 126 / 3e-30 C3HZnF FES1 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G18640 97 / 9e-21 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G26850 85 / 6e-18 histone-lysine N-methyltransferases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025447 [exp] 1008 / 0 AT2G33835 140 / 1e-34 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10002082 [exp] 99 / 5e-21 AT3G26850 214 / 1e-59 histone-lysine N-methyltransferases (.1.2) Lus10020889 [exp] 92 / 5e-19 AT3G18640 167 / 6e-43 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10003846 [exp] 89 / 5e-18 AT3G18640 192 / 4e-52 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10033487 [exp] 81 / 3e-15 AT3G18640 176 / 6e-46 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G056600 [exp] 270 / 7e-80 AT2G33835 151 / 2e-38 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.007G107800 [exp] 107 / 6e-24 AT3G18640 142 / 8e-35 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.005G061100 [exp] 105 / 3e-23 AT3G18640 140 / 2e-34 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.018G051900 [exp] 98 / 7e-21 AT3G26850 168 / 4e-47 histone-lysine N-methyltransferases (.1.2) Potri.006G227200 [exp] 92 / 6e-19 AT3G26850 158 / 2e-43 histone-lysine N-methyltransferases (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015319 pacid=23178744 polypeptide=Lus10015319 locus=Lus10015319.g ID=Lus10015319.BGIv1.0 annot-version=v1.0 ATGGCGCCATCGACTTCGATTCCCGCTCGGTCCCCCGACCTATCCCGTAATGATTCCGACTTATCTGTAGAGCTAGAAGAAGAGGAGGAGGAGGTTGAAG AGTACGAGGAGGTTGAAGAGGACGATGAGGTGGTGGAGGAGGAGGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGCTGTTGAAGAAGAGGT GGAGGAGGTTGAGGAAGAAGAAAAAGAAGAGGTGGAGGAGGTTGAGGAATATGAGGAAGTGGAAGAAGAAGAAGAGGAAGAGGAAGAGGAAAAAGTTGAG GAAATTCAAGAGAAGGGAAAGGAGGTGAAAGCATCATATCAGGAGGCTAACGAGAAAATGCAAGATGTCAATCAAGATATGGGTTGCGAGCAGAATGAGG GGGTATCTGTATCACAAAGTGTAGATATGGAGTGCGATGAGGATGAGGTGATATCTGTATCAAAAACTGTACCTATAGTTTCGAAAGATACTGCCATCGT TGAAGATGTTGGCTGTAATTTTGCATTACCTAGTCCTCCACTTGCCTTGCTGGCAACTCAAGGTGATGATTCGGTTATGAATGGTGGTGAGTCCAAGCAC CAGGAAGGTGGGAAAGAATCAATTGCTCTTGGTGATGTGAAGAATCACGTATGTGAGGATGGACGTTTGGCTACTAAGCCTTTGGAGGACTTGAGCCCAG AGGTGGGGGATAATGTTGATATGATTCCAGAACTAGTTAAACATGCAACTAACAAAGCTAGCAATTCTGATGGAAAGGCTGAGGGAGATTCAGCTGTGGC AAGTTCAAGCAGAGACCAGGTTAATGAAGGCTCTGCAAGCACTAGGCCAATCGGAAGGCTGCCTGATCCTGCGAAACAAACCTTTTCTTCAACTAGAAAG GATGCCATCACATCTCGTTTTTCTTTTGATAGCCAAATGGCTGCACAGATGGGAGGAAAGCCAATATTATCATCCCTTCAGGGAGAGGATCTATCTAGTG GCATTCCCCACAAGTCCTTCCGGAGCCTTGCATCAAACGGTGCTTCTTCGGTGTTTTCTACTCCGATGAAAGATGTTAGAACAGAGAGTCTTCCAAGAGG CTGGCCGCCTAGTGAACATGGAAGCTTGTTGTCTCCACTCAATGGAGGAAATTCCTTTTTGCTTAACAATCGGTTGCTACCAGAAAATAGATACTCTTCC AGTGGTTTGGATTTGAAGTCAAGGTTATACAACGACAAGAATTCGAGTTCTTTATTCAACAGTTTCGACAATTCAACATACCTAAGGAGTGCCTATATGG ATGATGATTGTGTTGGGAGTACTTCTGGTAGTGGCCGTAAACCAAGTGTTTCCTTTGACGACTGGGAACCATCTGTGCCTTTCCAACCATCTTTTCTCAT TACCCCAGTCAAGTCATCCCCGGCAAGAGAGTATGATCCTCTGCGCGACAGCATAGACTCACCGAACGGGATAGTCAAAGCCTATGAATTCTCTTTCATT AGCAACAGAAACTCCACCCAGAAGGCTCCAGATCAACCAGTTAAAGGTGATAACTTCCCGAGTCTCACCATTGGCAACGAAGTGAATGATGAGAGAAGTT CCATACCTCATCATAACAGATTCCATGGGAGCACATCGGATAACAATTGTGATGCCCCTCGAAAGGAGTCCTTCAAACATGGGGCTGCGATTGACGTTGA TGATTTAGCCGATGATCAGAGCGGCACGATGCCGAAAGAAGAGATCGCGTCTGTTAGTAACCACGTCGATGCTGATCGCAAACCTAGAAGTGACGGGTCA AGATGCAGAAATAAGGCGGATAGCATGGATGGTGACGGAAAGATGGACCAGGAAGTGCATAAAGAATCGAAATACCCAAAACACTTCCGAACTGCTCTCA TTGGTTTGGTTAAGGAGTTGCTGAAACCGACATGGAGGGAGGGCCATCTCAGCAAGGATGCACACAAGACCATAGTTAGAAAGTCTAGTGACAAGGTTCT GAGTACAATGCAATCGCATCAAGTACCAACTACCCCTGAGTCGATCAAACATTATCTTCAGTCTTCACGGCCGAAGCTTGAAAAACTAATAGAGGGATAT GCTTCCAGGTATGGGAAATCTTGA
AA sequence Show only first row Show all	>Lus10015319 pacid=23178744 polypeptide=Lus10015319 locus=Lus10015319.g ID=Lus10015319.BGIv1.0 annot-version=v1.0 MAPSTSIPARSPDLSRNDSDLSVELEEEEEEVEEYEEVEEDDEVVEEEVEEEEEEEEEEEEAVEEEVEEVEEEEKEEVEEVEEYEEVEEEEEEEEEEKVE EIQEKGKEVKASYQEANEKMQDVNQDMGCEQNEGVSVSQSVDMECDEDEVISVSKTVPIVSKDTAIVEDVGCNFALPSPPLALLATQGDDSVMNGGESKH QEGGKESIALGDVKNHVCEDGRLATKPLEDLSPEVGDNVDMIPELVKHATNKASNSDGKAEGDSAVASSSRDQVNEGSASTRPIGRLPDPAKQTFSSTRK DAITSRFSFDSQMAAQMGGKPILSSLQGEDLSSGIPHKSFRSLASNGASSVFSTPMKDVRTESLPRGWPPSEHGSLLSPLNGGNSFLLNNRLLPENRYSS SGLDLKSRLYNDKNSSSLFNSFDNSTYLRSAYMDDDCVGSTSGSGRKPSVSFDDWEPSVPFQPSFLITPVKSSPAREYDPLRDSIDSPNGIVKAYEFSFI SNRNSTQKAPDQPVKGDNFPSLTIGNEVNDERSSIPHHNRFHGSTSDNNCDAPRKESFKHGAAIDVDDLADDQSGTMPKEEIASVSNHVDADRKPRSDGS RCRNKADSMDGDGKMDQEVHKESKYPKHFRTALIGLVKELLKPTWREGHLSKDAHKTIVRKSSDKVLSTMQSHQVPTTPESIKHYLQSSRPKLEKLIEGY ASRYGKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33835	C3HZnF	FES1	FRIGIDA-ESSENTIAL 1, Zinc fing...		Lus10015319 [exp]	0	1
AT5G55040			DNA-binding bromodomain-contai...		Lus10032629 [exp]	1.0	0.8227
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Lus10015692 [exp]	5.5	0.8188
AT1G75590			SAUR-like auxin-responsive pro...		Lus10007552 [exp]	5.5	0.8011
AT3G51650			unknown protein		Lus10009097 [exp]	7.1	0.8110
AT5G27230			Frigida-like protein (.1)		Lus10033828 [exp]	15.3	0.7913
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030869 [exp]	15.9	0.7871
AT2G29210			splicing factor PWI domain-con...		Lus10001561 [exp]	18.2	0.8215
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10004521 [exp]	21.0	0.7062
AT1G11650		ATRBP45B	RNA-binding (RRM/RBD/RNP motif...		Lus10018345 [exp]	22.2	0.7756
AT5G47660	Trihelix		Homeodomain-like superfamily p...		Lus10038779 [exp]	24.7	0.7545

Compare expression of checked genes

Lus10015319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.