Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28340 895 / 0 AtRLP4 receptor like protein 4 (.1) AT1G25570 281 / 2e-86 Di-glucose binding protein with Leucine-rich repeat domain (.1) AT2G14440 151 / 3e-38 Leucine-rich repeat protein kinase family protein (.1) AT3G46400 142 / 3e-35 Leucine-rich repeat protein kinase family protein (.1) AT3G05990 139 / 4e-35 Leucine-rich repeat (LRR) family protein (.1) AT2G14510 140 / 1e-34 Leucine-rich repeat protein kinase family protein (.1) AT3G19230 136 / 4e-34 Leucine-rich repeat (LRR) family protein (.1) AT1G07560 138 / 6e-34 Leucine-rich repeat protein kinase family protein (.1) AT3G46350 137 / 1e-33 Leucine-rich repeat protein kinase family protein (.1) AT1G49100 137 / 1e-33 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015417 [exp] 955 / 0 AT1G28340 902 / 0.0 receptor like protein 4 (.1) Lus10013994 [exp] 953 / 0 AT1G28340 908 / 0.0 receptor like protein 4 (.1) Lus10041488 [exp] 308 / 1e-96 AT1G25570 880 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Lus10034275 [exp] 303 / 2e-94 AT1G25570 874 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Lus10002456 [exp] 152 / 1e-39 AT3G05990 542 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10025849 [exp] 137 / 2e-33 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10010528 [exp] 125 / 5e-31 AT3G19230 395 / 4e-135 Leucine-rich repeat (LRR) family protein (.1) Lus10019907 [exp] 119 / 1e-27 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10027903 [exp] 113 / 3e-26 AT3G19230 587 / 0.0 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G056800 [exp] 967 / 0 AT1G28340 931 / 0.0 receptor like protein 4 (.1) Potri.004G047300 [exp] 951 / 0 AT1G28340 928 / 0.0 receptor like protein 4 (.1) Potri.010G129300 [exp] 297 / 2e-92 AT1G25570 852 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Potri.008G117000 [exp] 286 / 3e-88 AT1G25570 816 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Potri.008G150200 [exp] 155 / 7e-41 AT3G05990 634 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G090800 [exp] 148 / 2e-38 AT3G05990 650 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.009G102300 [exp] 148 / 3e-38 AT3G19230 595 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G004700 [exp] 138 / 5e-34 AT2G37050 466 / 2e-149 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.002G242700 [exp] 135 / 6e-33 AT5G48740 1110 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G132100 [exp] 119 / 5e-28 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Lus10015320 pacid=23178723 polypeptide=Lus10015320 locus=Lus10015320.g ID=Lus10015320.BGIv1.0 annot-version=v1.0 ATGCGGATAAGCTGCGGATCAAGGGTCAACGTCAACACCCCGCCAACGAACACCAGATGGTACAAGGACTTCTCCTATACCGGAGGAGTTCCCTCGAACG CTACACGGCCAAGTTACGTAACTCCTCCACTCGACACACTCCGCTACTTCCCAATGTCATCCGGTCCCAACAACTGCTACAACATTAACAGAGTTCCCAA GGGACATTACACCGTTAGAGTGTTCTTTGGCCTGATCAAGCATCCTGACATCGACATCGAACCGTTGTTCGACATCTCGGTGCAAGGAACGCAAGTTTAC TCCTTGCAGTCCGGCTGGAGCAGCCAGAATGATCAAGCATTCGTCGAAGCTCGAGTCTTTCTGCTGGATAGAAAGGCCACAGTCTGCTTCCACAGCACCG GCCACGGCGATCCATCCGTGATCTCGATCGAAATTTTACAAATTGACGATAATGCGTATCGGTTTGGACCCGAATTCGGCCAGGGGACTATACTCAGGAC GGTCACGAGGTTGAGCTGTGGCAATGGGAAGCCGAAATTCGATGTGGATTATCGCGGAGACGATCATTGGGGCGGGGATAGATTCTGGGGTCCGATTCTG ACTTTCGGGCAGCGTTCTGATCGGGCTATATCTACCAAAGCTGGCATCAAGCATGTTACGAATGCTCCAAACTTTTATCCGAAAGCTCTCTACGAGACTG CAATCGTTAGCACCGACACTGAACCGGACTTGGCATACACGATGGATGTTGAACCTAACAGAAAGTACTCGATTTGGCTACATTTTGCTGAAATTGATGC TAGAGTGCCTGACGTAGGGAAAAGAGTTTTTGATATCTTGGTTAATGGCGATGTCGAGTTCGAGGATGTAGACATTATCAAGATGAGTGGAGGAATGTAT ACTGCACTCGTTCTCAACACGACAGTTGCGGTTAATGGGAGGTCGTTGACAGTAACGTTGCATCCTAAACAAGGACACTATGCGATCATTAGTGCCATTG AGATATTCGAGGTTGTTGTAGCCGAATCGAGAACTCTATCCGATGAAGTGGATGCACTGCAAAAACTGAAGAATTCGTTGGGACTACCCCTTCGATTTGG ATGGAACGGCGATCCCTGTGTACCACAACAACATCCATGGAGTGGAGCAGACTGCCAATTCGACAGGAAAAACTACAGATGGTTCATTGATGGACTTGGC CTTGACAGTCAAGGACTTAGAGGGTTCTTGCCCAGCGACATCTCCAAACTGCAACACTTGCAGAGCATAAACTTGAGTGGAAACAGCATCCATGGATCTA TTCCCACGTCGATGAGGAAGCTAACCAGTTTGGAAGTCTTAGACCTCTCCTACAACTTCTTCAACGGATCAATTCCTGAAGATGTCGGACAGTTGACATC ATTGCGTAGACTGAATCTCAATGGAAACCATCTGTCAGGAAGAGTCCCGGCTGCACTTGGAGGAATGCTTCTGCGTGGAGCTACTTTCAATCTTACTGAT AACGATGGTCTTTGTGGCATACCGGGACTACGAACATGCGGACCACATCTTTCCTCTGGTGCAAAGATCGCGATCGGGTTTGGTGTATCCGTTGCATTCC TCCTTATCGTTGTTTGTGCGACGTGCTGGTGGAAACGACGGCAGAATATCCTCAGAGCACAGCAGATTGCAACAAGAGGAGCTCCATATGCAAAAGCAAG AACACACCTTTCCCATGATATTCAACTAACAAGGAGCTATAGCCATGGCCGGACAGCCGCCGAGAATGGACCTAGCTTGCTGTCGTGA
AA sequence Show only first row Show all	>Lus10015320 pacid=23178723 polypeptide=Lus10015320 locus=Lus10015320.g ID=Lus10015320.BGIv1.0 annot-version=v1.0 MRISCGSRVNVNTPPTNTRWYKDFSYTGGVPSNATRPSYVTPPLDTLRYFPMSSGPNNCYNINRVPKGHYTVRVFFGLIKHPDIDIEPLFDISVQGTQVY SLQSGWSSQNDQAFVEARVFLLDRKATVCFHSTGHGDPSVISIEILQIDDNAYRFGPEFGQGTILRTVTRLSCGNGKPKFDVDYRGDDHWGGDRFWGPIL TFGQRSDRAISTKAGIKHVTNAPNFYPKALYETAIVSTDTEPDLAYTMDVEPNRKYSIWLHFAEIDARVPDVGKRVFDILVNGDVEFEDVDIIKMSGGMY TALVLNTTVAVNGRSLTVTLHPKQGHYAIISAIEIFEVVVAESRTLSDEVDALQKLKNSLGLPLRFGWNGDPCVPQQHPWSGADCQFDRKNYRWFIDGLG LDSQGLRGFLPSDISKLQHLQSINLSGNSIHGSIPTSMRKLTSLEVLDLSYNFFNGSIPEDVGQLTSLRRLNLNGNHLSGRVPAALGGMLLRGATFNLTD NDGLCGIPGLRTCGPHLSSGAKIAIGFGVSVAFLLIVVCATCWWKRRQNILRAQQIATRGAPYAKARTHLSHDIQLTRSYSHGRTAAENGPSLLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Lus10015320 [exp]	0	1
AT3G20790			NAD(P)-binding Rossmann-fold s...		Lus10031814 [exp]	3.5	0.7902
AT5G23130			Peptidoglycan-binding LysM dom...		Lus10013432 [exp]	4.0	0.7987
AT3G58830			haloacid dehalogenase (HAD) su...		Lus10020774 [exp]	4.6	0.8058
AT3G11945		PDS2, ATHST	PHYTOENE DESATURATION 2, homog...		Lus10029321 [exp]	5.3	0.7857
AT4G30993			Calcineurin-like metallo-phosp...		Lus10040035 [exp]	7.1	0.7630
AT1G25570			Di-glucose binding protein wit...		Lus10034275 [exp]	11.0	0.7397
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10024318 [exp]	11.6	0.7284
AT3G02900			unknown protein		Lus10009524 [exp]	13.0	0.7296
AT1G12460			Leucine-rich repeat protein ki...		Lus10007020 [exp]	13.1	0.7476
AT2G18245			alpha/beta-Hydrolases superfam...		Lus10028314 [exp]	14.9	0.6915

Compare expression of checked genes

Lus10015320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.