Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15780 165 / 7e-42 unknown protein AT2G10440 80 / 4e-15 unknown protein AT1G15770 70 / 7e-13 unknown protein AT1G15790 56 / 7e-09 unknown protein AT1G15772 49 / 4e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025451 [exp] 333 / 2e-107 AT1G15780 137 / 6e-35 unknown protein Lus10015323 [exp] 223 / 4e-61 AT1G15780 587 / 0.0 unknown protein Lus10025452 [exp] 205 / 7e-55 AT1G15780 248 / 3e-68 unknown protein Lus10025449 [exp] 150 / 8e-43 AT1G15780 42 / 7e-06 unknown protein Lus10015321 [exp] 70 / 7e-13 AT1G15780 78 / 5e-16 unknown protein Lus10025448 [exp] 59 / 9e-10 AT1G15780 80 / 9e-18 unknown protein Lus10023978 [exp] 50 / 2e-07 AT1G15780 71 / 4e-15 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G012400 [exp] 195 / 1e-51 AT1G15780 557 / 2e-175 unknown protein Potri.001G204900 [exp] 175 / 4e-45 AT1G15780 575 / 0.0 unknown protein Potri.003G028089 [exp] 174 / 5e-45 AT1G15780 223 / 5e-60 unknown protein Potri.003G013000 [exp] 159 / 1e-43 AT1G15780 171 / 5e-48 unknown protein Potri.003G028401 [exp] 144 / 4e-38 AT1G15780 162 / 2e-44 unknown protein Potri.003G013300 [exp] 108 / 2e-26 AT1G15780 120 / 5e-31 unknown protein Potri.003G026510 [exp] 85 / 2e-19 AT1G15780 160 / 2e-46 unknown protein Potri.003G025200 [exp] 77 / 4e-17 AT1G15780 139 / 2e-39 unknown protein Potri.003G014156 [exp] 64 / 1e-12 AT1G15780 110 / 4e-30 unknown protein Potri.003G028245 [exp] 64 / 1e-12 AT1G15780 110 / 4e-30 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015322 pacid=23178814 polypeptide=Lus10015322 locus=Lus10015322.g ID=Lus10015322.BGIv1.0 annot-version=v1.0 ATGCAGTCCAAAGTCTCCATTCCATTGCTAGCTAATCAACCTCAAGCACGCCAACAATTGTTGCCTCAGAACATGCAGAACAATATGAATTCTGGTGGAC TCCAAAGTTCTGCTACTTTACAAACTTCCCTGCCCCCTGTTTCTGGTTTGAACCAGACTCAAATCTATGTCGCTGGCCAAAATACTAGCCTGCAGAACCC AGTTGCGACTTCTATTGGCCAAGGGGTTTTGTTGAACATGTTTGGAAACCCTGATAACCAGATGCTTGGGAGGTACCCGGTTATTGGCCAACAACAACAG CGATTACAGAGTTCTCAACAGTATGCTTATCAGCAGCAGCAGCAGTTCCAACAACAGTTGCTCATGAAGCAGAGAAATCTAGCACACCCCATGATTCAGT CACAACTTCAGCAACAACAGCAGCCACAACAAAATGCTTTGCAGTCATCTCAATTCCAGCAGCCTCAGCAAAATGCTTTGCAGTCAGCTTCTATGTCTAG CCTTTCGCAGAATCAGTCATCCTCAGTCCAACAGTCAACACAATCCATGCTCAGGCAGCAACAATTTCAACAGCAGGCTGTTGGTCTTCATCAACAACCA TCGTCAATGATGCAGCAGCAGTTGCTATCTACACAACAACAATCACAAGTCTTGCCAACACAGCAGCAGCAACAACAACAGCAACCGATGCATTCTCAGC AACAACTAGCGTCTCTAGATTCTACGGCACAAACTGGACAGACAAATGGAGTGGATTGGCAAGAGGAAACCTATCAAAAGATAAAAGCCATGAAGGAGAT GTACTTGCCTGAACTAAATGAATTGATACAAAAAATTTCTACAACGTTACAGCAGCTAAACCTTACTCAAACGATCATTTCCAAAATTGCACCGATGAAT GACCCGAAGCTTGAAGTCGAAGATCCTATCTCAGAGAATATACCATTGAAGATGGTCAAAATGGAAAGCGAATCGCAGCTGCCAGCAGGCTACGACAGTA AACTCCCTGATATGGATGGGAATAATTTGATGCCTGCTGTTCAAGTGGGAGAAGCTGCTGTGGAAGGGGGTGACTGGAGAGCTACATTGCAGGCCGGCTC GAGGCAGGGAATCAGGAACAAAATATGTGGCTATGACTTATGGTACAGAATGGACATATTGAAGATGCATCTACCTTTTTCTGGCGAACAGGGGCTGCAA GAACTAGAGACAATTGCTGAACGATTTGAGGGAAAGATTTATAATTCTGCCACTAGTCAGTCACGTCCGGGACAACTGCAGCAACAACTTGGTCTGAACC AGCAGATTATTTCTCTCCAAAGGGAGATGCAAAAGAGGCTACAAGCTTTAGGGCAATCAATGAACATGCAAAGCTCAGTATCATCGATGCATCCGAACAA TATGTCAAACATACATCATGGTTTATCCAGCCAATTGATGATGAACTCTCTCCAGGCAGGTTCTAATACCGATTCTGGACAAAGAAATGCTATGGCCTCA TCACTGGGGACTACTATGGGATCTATACAACAAAACTCTTCAAGCGCTTCCCAGCAGGCAAATATTGGTGGTATGTCCTCGCAAAGTGGGATGCCCATGT GGCAGCAAAGCCAGCATCTTCAGTCCAATTCCAATATGCTTCAACAGCAACAAGTATTGCAGTCACAGCAGTTCGAACAGCGACAGATGCAGTTTCTGCA ACATCAGCATCAACAACAACTTGGTCCGACCCACCAGAATATTTCGCTGCAAAGGGAGATGCAACAGAGGCTACAAGCTTCGGTTCTACCACAGCAGAAA CTGTTATATCAATCAACGTCTCTAGATTCTACTGAGACAAGTGGAGTGGATTGGCAAGAAGAATTCTATCAAAAGATAAAAGCCATGAAGGAGATGTACT TGCCTGAACTAAATGAAATGTACCAAAAAATTGCTACAAAGTTAGAGCAGCATGATTCACTTCCACAGCAGCCGAAGTCGGATCAGCTTGAAAAGTTGAA GATGTTCAAGACTATGCTGGACCGCATGATAAATTTCTTACAAGTACCTAAAGAAAATGTCATTCCGAGTTTTAAAGACAAGCTTGGATCCTATGAGAAG CAGATTGTGAGTTTCCTGTCTGCAAATAGGCCGAAAAAGCCGATGCCTCAAAGCCAGCATCTCCAGTCCAATGCCAGTATGCTTCACCAACAGGATTATG TGAAGCAAGAGCATGATTAA
AA sequence Show only first row Show all	>Lus10015322 pacid=23178814 polypeptide=Lus10015322 locus=Lus10015322.g ID=Lus10015322.BGIv1.0 annot-version=v1.0 MQSKVSIPLLANQPQARQQLLPQNMQNNMNSGGLQSSATLQTSLPPVSGLNQTQIYVAGQNTSLQNPVATSIGQGVLLNMFGNPDNQMLGRYPVIGQQQQ RLQSSQQYAYQQQQQFQQQLLMKQRNLAHPMIQSQLQQQQQPQQNALQSSQFQQPQQNALQSASMSSLSQNQSSSVQQSTQSMLRQQQFQQQAVGLHQQP SSMMQQQLLSTQQQSQVLPTQQQQQQQQPMHSQQQLASLDSTAQTGQTNGVDWQEETYQKIKAMKEMYLPELNELIQKISTTLQQLNLTQTIISKIAPMN DPKLEVEDPISENIPLKMVKMESESQLPAGYDSKLPDMDGNNLMPAVQVGEAAVEGGDWRATLQAGSRQGIRNKICGYDLWYRMDILKMHLPFSGEQGLQ ELETIAERFEGKIYNSATSQSRPGQLQQQLGLNQQIISLQREMQKRLQALGQSMNMQSSVSSMHPNNMSNIHHGLSSQLMMNSLQAGSNTDSGQRNAMAS SLGTTMGSIQQNSSSASQQANIGGMSSQSGMPMWQQSQHLQSNSNMLQQQQVLQSQQFEQRQMQFLQHQHQQQLGPTHQNISLQREMQQRLQASVLPQQK LLYQSTSLDSTETSGVDWQEEFYQKIKAMKEMYLPELNEMYQKIATKLEQHDSLPQQPKSDQLEKLKMFKTMLDRMINFLQVPKENVIPSFKDKLGSYEK QIVSFLSANRPKKPMPQSQHLQSNASMLHQQDYVKQEHD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15780			unknown protein		Lus10015322 [exp]	0	1
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038755 [exp]	10.6	0.7128
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10001133 [exp]	17.2	0.7118
AT1G05170			Galactosyltransferase family p...		Lus10031567 [exp]	19.9	0.6932
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10014905 [exp]	28.4	0.6830
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10005229 [exp]	30.3	0.6834
AT5G01880			RING/U-box superfamily protein...		Lus10025228 [exp]	33.8	0.6433
AT5G50150			Protein of Unknown Function (D...		Lus10001248 [exp]	51.2	0.6598
AT4G31140			O-Glycosyl hydrolases family 1...		Lus10024535 [exp]	55.6	0.6353
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10019898 [exp]	56.3	0.6594
AT3G52490			Double Clp-N motif-containing ...		Lus10028849 [exp]	64.5	0.6520

Compare expression of checked genes

Lus10015322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.