Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15780 577 / 0 unknown protein AT2G10440 243 / 8e-67 unknown protein AT1G15770 154 / 2e-41 unknown protein AT1G15790 95 / 4e-22 unknown protein AT1G15772 49 / 7e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025452 [exp] 921 / 0 AT1G15780 248 / 3e-68 unknown protein Lus10025450 [exp] 764 / 0 AT1G15780 454 / 8e-149 unknown protein Lus10015322 [exp] 203 / 3e-54 AT1G15780 164 / 1e-41 unknown protein Lus10025451 [exp] 181 / 2e-49 AT1G15780 137 / 6e-35 unknown protein Lus10026119 [exp] 135 / 2e-35 AT1G15780 128 / 3e-34 unknown protein Lus10025448 [exp] 98 / 3e-23 AT1G15780 80 / 9e-18 unknown protein Lus10015321 [exp] 83 / 7e-17 AT1G15780 78 / 5e-16 unknown protein Lus10023978 [exp] 70 / 9e-14 AT1G15780 71 / 4e-15 unknown protein Lus10012027 [exp] 70 / 1e-11 AT4G12020 102 / 2e-24 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G012400 [exp] 716 / 0 AT1G15780 557 / 2e-175 unknown protein Potri.001G204900 [exp] 694 / 0 AT1G15780 575 / 0.0 unknown protein Potri.001G033400 [exp] 278 / 2e-79 AT1G15780 238 / 3e-66 unknown protein Potri.016G028200 [exp] 283 / 3e-79 AT1G15780 252 / 4e-69 unknown protein Potri.006G031200 [exp] 273 / 7e-76 AT1G15780 242 / 1e-65 unknown protein Potri.003G028089 [exp] 259 / 6e-72 AT1G15780 223 / 5e-60 unknown protein Potri.003G014000 [exp] 216 / 5e-61 AT1G15780 157 / 2e-41 unknown protein Potri.003G025500 [exp] 185 / 1e-51 AT1G15780 128 / 1e-32 unknown protein Potri.003G013000 [exp] 170 / 3e-47 AT1G15780 171 / 5e-48 unknown protein Potri.003G028401 [exp] 154 / 4e-41 AT1G15780 162 / 2e-44 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015323 pacid=23178806 polypeptide=Lus10015323 locus=Lus10015323.g ID=Lus10015323.BGIv1.0 annot-version=v1.0 ATGGATGGGAATAATTGGAGGCCTGCTGCTCCAGGCGGAGAAGCTGCTATGGAGGGGGGTGACTGGAGAGCTACATTGCAGACTGACTCGAGGCAGAGAA TCGTGAACAAAATAATGGAAACATTGAAGAGGCACCTACCCTTTTCTGGTCAAGAGGGACTGCAGGAACTAAAGAAAATTGCTATACGATTTGAGGAAAA GATTTATACTGCTGCCACTAGTCAGTCTGATTATTTGCGGAAGATATCATTGAAAATGCTCACAATGGAGAGAAAATCAGAGCTGCCTAATTCAGCAGGC AATGGCAGTAAACCCCCTGATCCAGGAGCATCCCCTAGTATGCAGTCCCAAGTTCCCAGTCAAGGGCAACCACTTCCTATTCCATTGCCAGCTAATCAAC CTCAAGCACGCCAACAATTGATGTCTCAGAATATGCAGAACAATATGAATCCTGCTGGACTCCAAAGTTCCGCTACTTTACAAACTCCGCTGCCCCCTGT TTCTGGTATGAACCAGACTCCAATCAATGTCGCCGGCCAAAATGCTAGCATGCAGAATATGTCTAACATGGCTCAGAACCCAGTTGCAACTTCAATAGGC CAAGGGGTTTCATCGACCGTGTTTGGAAACTCTCATAGACAGATGCCTGGGAGGAACCAGGTTATTGGCCAACAACAACAGCAATCACAGAATTCTCAAC AGTATAATTATCAGCAGCAGCAGTTCCAACAACAGTTGCTCATGAAGCAGAGAAATATAGCACACCCCATGATTCAGTCACAACTTCAGCAACAGCAGCA GCCACAGCAAAATGCTTTGCAGTCATCTCAATTCCAGCAGCCTCAGCAAAATGCTTTGCAGTCAGCTTCTATGTCTAACCTTTCGCAGAATCAGTCATCC TCAGTCCAACAGTCAACACAATCCATGCTCAGGCAGCAACAATTTCAACAGCAGGCTGTTGGTCTTCATCAACAACCATCGTCAATGATGCAGCAGCAGT TGCTATCTACACAACAACAACCACAAGTCTTGCCGACACAGCAGCAGCAACAACAACCGCAAGCAATGCATTCTCAGCAACAAATGGCGGGGCAACCGGC CAATGCTGCATCCATGCAGCAACATCAGTTTGTTGGGCAACAAAACAATATGGGTGACTCGCAGCAACAACAGAGATTGCTCAACCAGCAGGCTAATCAG CAGCAGCAACAGTCTCAACAGCAGTCTCAGCAGCAGCAGATGACTGCTCAGCATCAACAACAACTGGGTTCTCAAAGTAATTTCTCAGGTCTACAGCAGC CAACACAACAGCATTTGCTTGGAATACAGTCTGGCAACTCGAGCATGCAGAACAATCAACATGCAGTAAATATGCTACAGCAGTCTAAGGTTCCTCTCCA GCAACAAACCCAACAGAATTCTTCTAATTTATTACCATCACAACAAGGGCAGCCGACGCAATCACTGGCATCCCAGCAACAACTGATGTCTCAGATTTCG TCACATCCAGGACAACTGCAGCAACAACTTGGTCAGAACCAACAGACCACTTCGCTCCAAAGGGAGATGCAACAGAGGCTACAAGCTTCAGGGCAACCAC CGGGCTCTTTGGTTCAACCACAGAATGTGGTTGATCAGCAGAAGCAGTTATATCCATCGCAAAGACCACTTCCAGAAACATCATCAACGTCTCTAGATTC TACAGCACAAACTGGCCAGCCAAATGGAATGGATTGGCAAGAGGAAGTCTATCAAAAGATAAAAGCCATGAAGGAGATGTACTTGCCTGAACTAAATGAA ATGTTCCTAAAAATTGCTTCAAAGTTACAGCAGCATGATTCACTTTCGCAGCAGCCGAAGTCAGATCAGCTTGAAAAGTTGAAGATGTTCAAGACTATGC TGGAGCGCATGATAAATTTCTTACAAGTACCCAAAGAAAATGTTATTCCGAGTTTTAAAGACAAGCTTGGATCCTATGAGAAACAGATTATGAGTTTCCT AACTACAAATAGGCCGAAAAAGCCGATGCCTCAAATGCAACAAGGGCAACTTCACCCTTCTCACATGCAATCCTTGCAACAAGCACCATCACAAAACCCT CAACCGCAGTCTCATGAAAATCAAATGAACCCCCAGTTGCAACAAATGAACATGCAAAATTCAGTATCATCCTTGCATCAGAACAATATGTCAAATATGC AGCAATCGATGATGAATTCTCTCCAGCCAGGTTCTAATATCGATTCTGGACAAGGAAATGCTATGGCCTCATCACAGGGGGCTACTATGGGATCTATACA ACAAAACTCTTCAAGCGCTTCCCAGCAGGCAAATATTGGTGCCATGTCCTCGCAAAGTGGGTTGACCATGTTGCAGCAAAGCCAGCATCTTCCGTCCAAT CCCAATATGCTTCAACAGCAACAAGTATTGCAGTCACAGCAGTACAAACAGCAGTTTCAACAGCGACAGGTGCAACAGATACTTCATCAGCATCAACAAC AACAACAACAAAGGCAGCAACAAATAAAACAACAAGAAAACCAGCAGCAACAGCAGCAGCTACCTACACAGTTGCAGACACAACAAATGTCACAGTTACA TCAGCAGATGAACGACACAAATGAGATGAAGATTAGACAGGGGTTGGGGGGTGTTAAGCCAGGCGGTGTCTTTCAGCAACATCTCTCAAATGGTCAGCGA GCTGGTTATCCCCCGCAGCAGATGAAATCCGGAGCTTCCTTTCCTATTTCCTCCCCTCAAATGTTTCAAACTCCTTCGCCCCAGTTACTACAACATTCTT CTCCGCAAGTTGACCAGCAGAACCTCCATCCATCACTTCCCAAAACTGGAACTCCTCTACAGTCTGCACACTCGCCTTTTGTTGTTCCGTCTCCTTCAAC TCCTTTGGCACCATCCCCTAATCCCGGCGATTCTGAAAAACCCGGCATCTCTTCACTTTCAAATGCTGGAATTTCTGGGCATCAACACCCAACTGCTGGA CAAGCACCTGCACAGTCTCTTGCGATCGGTACTCCTGGGATCTCTGCTTCACCGTTGCTTGCAGAGTTCTCCGTTCCGGAAGGGGTACACGGTAATGCTT TCACAACTGTTTCTGGGAAGCCATCTGTTGCAGAGCAGCCCCTTGACCGGTTACTTAAAGCGGTAAAGTCTGCTTCTCCCCAGGCTTTGAGTGCAGCTGT GAGTGACATCGGTTCGGTTGTTAGTATGATCGACAGAATTGCAGGGTCTGCTCCAGGTAATGGATCTAGAGCCGCTGTGGGGGAGGATTTAGTGGCGATG ACGAAATGTCGTCTTCAAGCAAGAAATTTCATCACTCAAGATGGAATTAGTGGAACTAGAAAAATGAGGAGATTCACTAGTGCCATGCCCTTAAACGTCG TATCATCCGCTGGCGGTGGAAGTGATAGCAAGCAATGGAGCGGTGCAGAGACCTCTGATCTCGAGTCTACTGCAACATCTGGTGTTAAGAGGCCTAGGTT GGAGGCAAATCATGCATTGCTGGAAGAGATAAGGGAAATCAACCAGGGACTAATTGACACTGTGGTTGAAATTAGCGATGAGGATGTTAATCCCAGCGCT GAAGGCGGGGAAGGAACTATCGTAAAGTGTTCGTACTCTGCTGTAGCCCTTAGCCCCGGTTTGAAATCGCAGTATGCTTCTGCTCAAATGTCCCCAATTC AGCCGCTACGATTGCTCGTGCCTATAACTTATCCGAGCTGCTCTCCTGTTCTACTGGACAAGTTCCCAGTTGAAGCCAGCAAGGAGTATGAGGATGTATC AGCGAAGGCAAAGTCGAGATTCAGCATATCTCTTCGCAGCCTATCGCAACCGATGTCGCTCGGGGAGATAGCAAGGACATGGGACATATGTGCCCGGGCA GTGATATCGGAACACGCCCAGCAGAGCGGCGGAGGTAGCTTCAGTTCCAAGTATGGCACCTGGGAGAATTACTTGACCGCCGCTTAA
AA sequence Show only first row Show all	>Lus10015323 pacid=23178806 polypeptide=Lus10015323 locus=Lus10015323.g ID=Lus10015323.BGIv1.0 annot-version=v1.0 MDGNNWRPAAPGGEAAMEGGDWRATLQTDSRQRIVNKIMETLKRHLPFSGQEGLQELKKIAIRFEEKIYTAATSQSDYLRKISLKMLTMERKSELPNSAG NGSKPPDPGASPSMQSQVPSQGQPLPIPLPANQPQARQQLMSQNMQNNMNPAGLQSSATLQTPLPPVSGMNQTPINVAGQNASMQNMSNMAQNPVATSIG QGVSSTVFGNSHRQMPGRNQVIGQQQQQSQNSQQYNYQQQQFQQQLLMKQRNIAHPMIQSQLQQQQQPQQNALQSSQFQQPQQNALQSASMSNLSQNQSS SVQQSTQSMLRQQQFQQQAVGLHQQPSSMMQQQLLSTQQQPQVLPTQQQQQQPQAMHSQQQMAGQPANAASMQQHQFVGQQNNMGDSQQQQRLLNQQANQ QQQQSQQQSQQQQMTAQHQQQLGSQSNFSGLQQPTQQHLLGIQSGNSSMQNNQHAVNMLQQSKVPLQQQTQQNSSNLLPSQQGQPTQSLASQQQLMSQIS SHPGQLQQQLGQNQQTTSLQREMQQRLQASGQPPGSLVQPQNVVDQQKQLYPSQRPLPETSSTSLDSTAQTGQPNGMDWQEEVYQKIKAMKEMYLPELNE MFLKIASKLQQHDSLSQQPKSDQLEKLKMFKTMLERMINFLQVPKENVIPSFKDKLGSYEKQIMSFLTTNRPKKPMPQMQQGQLHPSHMQSLQQAPSQNP QPQSHENQMNPQLQQMNMQNSVSSLHQNNMSNMQQSMMNSLQPGSNIDSGQGNAMASSQGATMGSIQQNSSSASQQANIGAMSSQSGLTMLQQSQHLPSN PNMLQQQQVLQSQQYKQQFQQRQVQQILHQHQQQQQQRQQQIKQQENQQQQQQLPTQLQTQQMSQLHQQMNDTNEMKIRQGLGGVKPGGVFQQHLSNGQR AGYPPQQMKSGASFPISSPQMFQTPSPQLLQHSSPQVDQQNLHPSLPKTGTPLQSAHSPFVVPSPSTPLAPSPNPGDSEKPGISSLSNAGISGHQHPTAG QAPAQSLAIGTPGISASPLLAEFSVPEGVHGNAFTTVSGKPSVAEQPLDRLLKAVKSASPQALSAAVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAM TKCRLQARNFITQDGISGTRKMRRFTSAMPLNVVSSAGGGSDSKQWSGAETSDLESTATSGVKRPRLEANHALLEEIREINQGLIDTVVEISDEDVNPSA EGGEGTIVKCSYSAVALSPGLKSQYASAQMSPIQPLRLLVPITYPSCSPVLLDKFPVEASKEYEDVSAKAKSRFSISLRSLSQPMSLGEIARTWDICARA VISEHAQQSGGGSFSSKYGTWENYLTAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15780			unknown protein		Lus10015323 [exp]	0	1
AT1G15780			unknown protein		Lus10025452 [exp]	1.0	0.8354
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10018620 [exp]	2.4	0.8155
AT1G50120			unknown protein		Lus10013430 [exp]	8.1	0.7678
AT3G28430			unknown protein		Lus10018448 [exp]	8.9	0.7670
AT5G45900		ATAPG7, ATG7, A...	AUTOPHAGY-RELATED 7, AUTOPHAGY...		Lus10015289 [exp]	9.2	0.7916
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10039855 [exp]	11.3	0.7933
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10008429 [exp]	14.9	0.7664
AT1G61850			phospholipases;galactolipases ...		Lus10007661 [exp]	16.3	0.7928
AT2G47010			unknown protein		Lus10009978 [exp]	17.3	0.6548
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10019243 [exp]	17.8	0.7088

Compare expression of checked genes

Lus10015323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.