Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28380 312 / 9e-100 NSL1 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) AT4G24290 247 / 1e-77 MAC/Perforin domain-containing protein (.1.2) AT1G14780 186 / 8e-52 MAC/Perforin domain-containing protein (.1) AT1G29690 168 / 1e-45 CAD1 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025453 [exp] 494 / 1e-170 AT1G28380 745 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Lus10035789 [exp] 252 / 2e-76 AT4G24290 911 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10012717 [exp] 231 / 1e-68 AT4G24290 764 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10010894 [exp] 227 / 3e-67 AT4G24290 761 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10037363 [exp] 221 / 2e-65 AT4G24290 837 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10000175 [exp] 185 / 4e-56 AT4G24290 261 / 7e-88 MAC/Perforin domain-containing protein (.1.2) Lus10029279 [exp] 188 / 5e-53 AT1G29690 868 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10002768 [exp] 184 / 1e-51 AT1G29690 863 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10041285 [exp] 183 / 9e-51 AT1G14780 507 / 2e-173 MAC/Perforin domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047700 [exp] 365 / 2e-120 AT1G28380 809 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.011G057100 [exp] 358 / 2e-117 AT1G28380 790 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.003G006500 [exp] 251 / 1e-76 AT4G24290 922 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.019G001000 [exp] 232 / 3e-69 AT4G24290 780 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.001G305600 [exp] 227 / 2e-67 AT4G24290 783 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.008G136401 [exp] 203 / 1e-58 AT1G14780 691 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.002G234700 [exp] 200 / 4e-57 AT1G14780 520 / 8e-179 MAC/Perforin domain-containing protein (.1) Potri.010G104600 [exp] 197 / 3e-56 AT1G14780 697 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.004G064000 [exp] 177 / 4e-49 AT1G29690 901 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.011G075500 [exp] 168 / 1e-45 AT1G29690 890 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF01823 [flax] [poplar] MACPF MAC/Perforin domain
Representative CDS sequence Show only first row Show all	>Lus10015324 pacid=23178816 polypeptide=Lus10015324 locus=Lus10015324.g ID=Lus10015324.BGIv1.0 annot-version=v1.0 ATGTCGCTTCAACGCCTTGACCCACGAAGTGCGGCGAAGAAAGCGGTTTCCGTGATCGGGTTCGGGTACGATTTATCGAACGACGTCCGGCTCTCGTCCT GCAAGCCAGGTCCGTCTGGGTCGAAGCTGCTCGAGCTCGACCCGAAGATACCCACTCGGGACTTGGTGGTTCCGGGTGGGATAGTGGTTAAGGACGTCTG GAGCGGGATCAAGTGCGATAAGGGCGAACGTACTCGGTTCAATTCCGACGTCCTGTCTTTCAATCAAATGTCGGAGAAGTTGAACCGGGAATTGACCTTA TCGGGGAAGATCCCGACAGGGATGTTCAATACGATGTTTGATTTCAAAGGCTGTTGGGCGAAAGACGCCGGTTCGGTCAAGTCGCTAGCCTTTGATGGAT GGTTCATTACTCTGTACAACATCGAGCTCGAACGGTCACATTTGACCCTCTCCGAAACGGTCAAATCCGAGGTTCCCAATTCCTGGGATCCTCAGGCGCT TGCTGAGTTTATCGAGAAATACGGAACCCATATCGTGGTCGGGGTGAAAATGGGAGGTAAAGATGCGATCCACATCAAGCAGTTAAAAAGATCGACTCTT GATCCGACTCAAGTGCAGAAGTTGCTGAAGCAGTTAACTGATAAGAGATTTTCGCAGGATTCTGAATCATCAGCTAAACCCAAAGATGAAGATGCTCTAC CATTTGGAGTTCATGGATCTTATTATGCTGCTTCAATTAGGCCGCCTGGTGTCACTCACTTAAAGAACGAGGTTGAATCAGGAAACAGGCCAGTGACAGG AATCAGGTTACACTTGGAAGGCAAAAGAAGTGACCATCTAGCGGTCCATCTACAGCACCTCGCCACGGTTCCAAACTCGATCCAGCTTGAGAACGACGAC CACGATAGCCACGGTGCCCATCCGATCGACCAGCCCGAACGAGGCTACCTGGAGCCCGTCAATTGGACGATATTCTCCCACGTCTGCACCGCTCCCGTGC AGTACGACGGAGCTCGAATCGACGACACCGCCTCGATCGTTACCAAGGCCCGGCTCGAGGTCAGAGTCACGGGCTTAAAAAAAGTCCTGTTCTTGAGACT CGGTTTCTCCATGGTCAAGACAGCCCGGATCCGCAGATCCGAATGGGACGGACCTTCCAACACAATGTCGAGAAAGTCGGGGATTTTCTCGACATTGATG ATTAGTACCAAGTTCAGTACTAACAATATGAACCCGAACGAACAAGAAGTGGTTGGAAAGGTGGATTTGAATTCAGCCATTTTTCCCGGTGGACCTCCCT TACCGGTTAGGGCACCGAAAATGTCAAATTTCGTCGACACCAGGGAGATGGTGAGAGGTCCCGAGGACTCCCCAGGATATTGGGTCATGACCGGAGCTAA GCTATGTGTAGAGGAAGGTCGGATTTCGATCAAGGGGAAGTATTCTTTGTTAGCAATGATTTCTGAAGAATGTATGATGTTTATGTGA
AA sequence Show only first row Show all	>Lus10015324 pacid=23178816 polypeptide=Lus10015324 locus=Lus10015324.g ID=Lus10015324.BGIv1.0 annot-version=v1.0 MSLQRLDPRSAAKKAVSVIGFGYDLSNDVRLSSCKPGPSGSKLLELDPKIPTRDLVVPGGIVVKDVWSGIKCDKGERTRFNSDVLSFNQMSEKLNRELTL SGKIPTGMFNTMFDFKGCWAKDAGSVKSLAFDGWFITLYNIELERSHLTLSETVKSEVPNSWDPQALAEFIEKYGTHIVVGVKMGGKDAIHIKQLKRSTL DPTQVQKLLKQLTDKRFSQDSESSAKPKDEDALPFGVHGSYYAASIRPPGVTHLKNEVESGNRPVTGIRLHLEGKRSDHLAVHLQHLATVPNSIQLENDD HDSHGAHPIDQPERGYLEPVNWTIFSHVCTAPVQYDGARIDDTASIVTKARLEVRVTGLKKVLFLRLGFSMVKTARIRRSEWDGPSNTMSRKSGIFSTLM ISTKFSTNNMNPNEQEVVGKVDLNSAIFPGGPPLPVRAPKMSNFVDTREMVRGPEDSPGYWVMTGAKLCVEEGRISIKGKYSLLAMISEECMMFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24290			MAC/Perforin domain-containing...		Lus10015324 [exp]	0	1
AT3G13600			calmodulin-binding family prot...		Lus10016052 [exp]	1.0	0.8671
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10009684 [exp]	1.4	0.8392
					Lus10023285 [exp]	4.0	0.8010
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041683 [exp]	7.1	0.8037
AT5G23750			Remorin family protein (.1.2)		Lus10024514 [exp]	7.7	0.7298
AT4G12010			Disease resistance protein (TI...		Lus10016029 [exp]	8.9	0.7534
AT1G27170			transmembrane receptors;ATP bi...		Lus10007823 [exp]	9.9	0.7561
AT5G07610			F-box family protein (.1)		Lus10024021 [exp]	11.2	0.7837
AT4G36550			ARM repeat superfamily protein...		Lus10041754 [exp]	11.4	0.7915
AT1G09157			Protein of unknown function (D...		Lus10030466 [exp]	13.9	0.7659

Compare expression of checked genes

Lus10015324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.