Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28420 989 / 0 HD HB-1 homeobox-1 (.1) AT5G44180 489 / 1e-145 HD Homeodomain-like transcriptional regulator (.1.2) AT4G12750 163 / 3e-40 Homeodomain-like transcriptional regulator (.1) AT4G03250 57 / 1e-07 HD Homeodomain-like superfamily protein (.1) AT5G08630 56 / 3e-07 DDT domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025454 [exp] 2727 / 0 AT1G28420 1275 / 0.0 homeobox-1 (.1) Lus10039870 [exp] 511 / 1e-151 AT5G44180 1398 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10018634 [exp] 491 / 1e-144 AT5G44180 1391 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10016078 [exp] 177 / 4e-44 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10015400 [exp] 150 / 2e-40 AT1G28420 166 / 6e-47 homeobox-1 (.1) Lus10013979 [exp] 148 / 1e-39 AT1G28420 161 / 4e-45 homeobox-1 (.1) Lus10012302 [exp] 145 / 3e-34 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10017688 [exp] 119 / 4e-29 AT5G44180 148 / 4e-40 Homeodomain-like transcriptional regulator (.1.2) Lus10033644 [exp] 117 / 1e-28 AT1G28420 148 / 4e-40 homeobox-1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G057700 [exp] 1175 / 0 AT1G28420 1262 / 0.0 homeobox-1 (.1) Potri.004G048675 [exp] 1174 / 0 AT1G28420 1266 / 0.0 homeobox-1 (.1) Potri.017G016200 [exp] 949 / 0 AT5G44180 1322 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.007G135500 [exp] 944 / 0 AT5G44180 1226 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.014G173300 [exp] 177 / 1e-44 AT4G12750 1038 / 0.0 Homeodomain-like transcriptional regulator (.1) Potri.001G276800 [exp] 57 / 1e-07 AT4G03250 275 / 2e-86 Homeodomain-like superfamily protein (.1) Potri.009G071700 [exp] 57 / 1e-07 AT4G03250 303 / 5e-97 Homeodomain-like superfamily protein (.1) Potri.004G138900 [exp] 52 / 4e-06 AT5G08630 652 / 0.0 DDT domain-containing protein (.1) Potri.019G008541 [exp] 52 / 5e-06 AT5G08630 683 / 0.0 DDT domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02791 [flax] [poplar] DDT DDT domain CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10015325 pacid=23178734 polypeptide=Lus10015325 locus=Lus10015325.g ID=Lus10015325.BGIv1.0 annot-version=v1.0 ATGGATTCCAATTCCGACGGAGAAGATTACCAGAGCAGGAAGCCGAACAAGGGCGTCGCATCTGGCTCCGGCGGCGGCGGCGGTGGCGGCGACGGAAAGC CCAAACGTCAGATGAAGACTCCGTTCCAGCTCGAAACCCTCGAGAAAGCTTATTCCGTGGAGACATACCCAACAGAGGCTACGAGGATAGAGTTAGCTAA GAAATTGGGACTAGCGGACAGGCAATTGCAGATGTGGTTTTGCCATAGGAGGTTGAAAGACAGAAGGGAGGAGAAGAAAGAAGAGAAGAAAGTGGAGAAG AAAGAAGAGAAGACTCCGGCAAAGAAGCCTCGGAAAGCGCTGCCCATGCCGGAATCTCCTGTGGAGGATGTCAAGGCTGAAGTTCCTGATCATGGAAGTA ACTATGGATCTGGCTCAGGTTCTGGTTCCAGCCCTTGTACAGATCCGAGAAGAATGCCAGTGGCTGATGTGCCGATGTCGAGGGGGTATAAAGAGCCACC ACGGCAGTCGGCTATTCTGGTTAGAGCTATTGCATGTGTGGAGGCACAATTGGGGGAGCCTTTGAGGGAGGATGGTCCGATCTTAGGAATCGAGTTTGAT ACATTGCCACCTGATGCTTTTGGTGCCCCAATTGCTGCAGTGGTGGAAGAGCAGAAGCGCTATTCTTATGAAGAGAAGATAGTTCAACGACGTGAAGGGA AATCAAAAAAGGCCTCTGGAAGAGTTGTTCATGAGTATCAGTTTCTCCAGGATCAATCCAGCATAAGACCTGACACATATCGACAAGTTACCCAACATTC GTACCATGATACGCCAGCTGATACTTCAATGAGGAGAACTTCAACGTCTGTACGTGGAGATGAACGTTTGCCCAGAGTTCATGGTATCCAAACTCCTGCA TCCCGTGTACGCCTTTTGTCTGCACACGAAGGGAAAAGTCATCTTCTTCCATCACCTCAAAGGGATGATGACTATCTTCCGCAAGCGCACCCCTTTCAAA ATCATAGAATAAGTGGTGAATCTACCAGTCATCATATGTTGGCACCTGAAAATACAAGTGTATTCCAGGATGCCAATGTCTTCCATGGTGAATCAGATTT TATGACAGAGAAGAAACCGAAAATAAAGAATGAAGAAGCAAGACTTCGGGAAGCTGAAGCCCAGGAAAGTCGAACGCGAAAAGAGATTGAGAAACAAGAC TTACTGAGACGCAGGAATGAAGAGCGAATGAGGAAAGAAATGGAAAGGCAAGACCGTGAAAGAAAGAAGGAAGAAGAGAGACTCATCCGTGAAAGACAGC GAGACGAGGAGAAGTCATTGCGTGAACAAAAACGTGAGCTAGAAAGGAGGGAAAAGATGTTGCAGAAAGAGTATTTAAGGGCTGAAAAGCAGAAGCAAAG GGACGAGCAAAGGAAAGAAAGAGAGGAAGTTAGACGCAAAGCTGCCATTGAGAAAGCAACTGCACGGAGAATTGCCAAAGAGTCTTTGGATCTTATTGAG GATGAACAGTTGGAGCTCATGGAATTGGCTGCTGCAAATAAAGGGTTGTCCTCAATAGTTCAACTAGACTACAATACAATGCAAACTCTTGATGCATTCA GAGATTCTTTATGCACATTCCCATCGGAGTCGATACAGTTGAAGAAGCCATTTAGCTTTCAGCCTTGGGTGGATTCAGAAGATAATGTTGGAAACCTTCT GATGATCTGGAGGTTCTGCATAACTTTTGCTGATGTCCTTGGATTATGGCCATTTACCCTTGATGAGTTTATTCAAGCGCTTCATGACTATGATTCAAGG TTGCTGGGTGAGATACACATTAGTCTTTTGAAATTAATCATTAAGGACATTGAAGATGGTGGTAGGGCACCAACTGGATTAGGGACGAACCAGTATTCTG TAGCTAATCCTGAAGGCGGACATCCACAGATTGTTGAAGGGGCATACATGTGGGGCTTTGACATACGCAAGTGGCAGCAACTCTTGAATCCATTATCTTG GCCTGAAATATTGCGGGAGTTGGCCCTGTCTGCAGGTTTTGGGCCACAATTGCGGGACAAGAATGCAGCATGGAGGCACTCAAATGATGAGGCCAACCGT TATCAAGAGACAGTTTTGAATTTACGGAATGGATTGGCAGCTGAAAATGCTTTTGCACTGATGCGAGAAAAAGGTTTATTAAATCCACGGAAATCTAGGC ACAGACTTACACCTGGAACAGTAAAATTTGCTGCTTTTCATGTTCTTTCACTCGAAGGAAGTGAGGGATTGACGTTGATAGAACTCGCAGATAAGATTCA GAAATCCGGACTTCGGGACTTCTCAACAAGCAGGACTCCAGAGGCGTCTATATCTGTTGCTTTAACTAGGGATCAGAAGCTCTTTGAAAGAGTTGCTCCT TCAACATATTGTCTGCGGGATCCTTACAGGAAGGATCCAGCAGATGGAGAGGCGATACTTGCAGAAGCAAGAAAGAAAATGTATGTTTTTGCAAATGGGT TTTTGGAGGAAGAGGATGCTGACGAGGTTGCTGATGATGTCGAACGAGATGATGATTCCGAGGCTGAAGCTGATGACGATCCTGAAGTTGATGATCTGAG TACTCCACTGCACGCCGATAAAATTGTTGGCCAAGCTAATGGAGTTCATACTCCATTCGGGAATGACAATGATGATGAAAAAGAAAATGGTCCGACGGAA ATCGAAAATGATGATCCACACATTTGGTCGTCATTAATTGTAAAGAGTGAATCTGAGAATGATCTCTCTCGATTCCCTGAGAATGGGGCAAGAGAAACAA GTACTCCTGGTACAATTGACCAATTTGCTGATAGAAATCCCTTGGTTGGTAATGCGAAGGAAGAGAACGTTGAAATTGATGAAAGCAAGTTTGGTGAATC TTGGGTTCAAGGACTTGCAGAGGGAGAATATTCTCATCTCAGTGTTGAGGAGCGTCTCGATGCCCTTTTCAAGCTGGTTGGCATTGCAAACGAGGGTAGT ATCATACGTTCTGTTCTTGAGGACCGGTTGGAAGCTGCGACTGCTCTTAAAAAACAGATGTGGGCTGAGGCGCAATCGGATAGGAGTCATTTGAGAGATG ATGTAATTCAGATATTGGAGGTACCGTCTGGTAACCCTAGTCCTTCGCATCAAGCTGATGACTTTAAGGACGCTTCTCGAAACATTATAGAGGAACAGAA GTTACTTCTTACGTCTGAGAATGTACAGAATGGCAATTTTCACGACGACAGAACTGCAGCTGTTCAAGATCTACAACTTGGGTATAGTTCTAAAAGGTTC AGATCACAACTGAAAGCGTATACTGCCCATGTTGCAGAAGAGACTTATATTTATAGGTCACTGCCACTTGGTCAAGATCGCAGGCGTAACCGGTACTGGC TGTTTGTTGCTTCTGCTTCTCATAGTGATCCTTGCTCTGGTAGGATCTTTGTTGAATTACAAAATGGAACATGGAGGGTTATTGATTCTGAAAAGGAGTT CGATGCCCTTTTGTCGTCCTTGGATAGTCGTGGGATTAGGGAATCCCATTTGCGTCTGATGTTGAAGAAGATTGAGATGTCCTTCAAAGATACTGTTAGG ACGAGCTTGCAATCTAGCAAATCAATGGAAGAAGAAGTCTCACTAAGAGACTCCAGCCCCAATTGTTCAGCTGGTACGGAAAGCCCTAGCAGTTTGGTTT GCGGAACGAACTCCAATCTACATGATGTATTTTCTTTGTTCCGAATCGAGATTGGGAGGAACGAACGGGAGAAACGGGGGGTGTTGCGGAGGTATCAGGA TCTGCAGATGTGGATTTGGAAAGAAAGCCTCAGCCCAACGGCATCATGTGCAATGAAGTTCGGAAAGAAACGATCCAGACAACTGTTGGATGCATGCGAC TCTTGTCTCGACTCTTACGCATCCGAAGATTGCCATTGCATTTTTTGCCACCAGACTTTTGGTGGTGGCAATTTTGATTTTGGAGAACACGAAGCTATAT GCAGTAAACGAAGTAAGCCAGACCCCACGGATGCCTGTGGGTCTAATCCATCTCTACCACTGGGGATCAATCTGCTTAAGGCTCTGTTAGCTTCAATTGA GGCATTTGTTCCAGCGGAAGCTCTTGAATCGTTTTGGACCGAGAGCCATAGAAAGTCGTGGAGCAGGAGATTGGCGGCATTGTCATCGATTGAAGAACTT CTTCAGATGCTGAGTGCGTTTGAGAGTGCCATAAAACCAGACTTCTTGTCACCTAATTACGAATCTACGAAGGAATTACTTGGGATAACTACACTAAATG AAAAATCTGATTTGGCCTCGGTTCGCGTACTTCCGTGGATACCAAGAACCATGTCAGCCGTGGCTCTGAGACTCTTTGAGCTGGACGCTTCCATCATTTA CGTAAAGCAAGAAAAGGATATGCCTTCTGATGACAATCTCGATACACTTGTAACGAAGCAGCATCAAGCTTATTCGCTTGTCGAGCAAGAAAACTTCAAG GAAGAGGTCGCGGTTAACCCACCGAGCAAGTCGAACGTAGGTAAACGTCGAAGAGTGAAAAGCAATCTAGGACGAGTGTCGAAAAAGCAGCGGAGACGAA CGCCGACTCATAGACCGCCTTCCCAGACAAGCAGTCGAAAGTCACAGGCGGCGAACAACCAGAGGCAAGGGATAGTAGCAGCGTCGAGGCGAGAGGTGAA CATTCAGGAGCCGAGTCGGGGTCCAAGGACGGTCCGGAAGAGGAGACCGGAGAGTGTGAATGCCAGAGGAGAGCAATTTATTGGCCACGCGACCGAGAGG ATGCCTCCTCCCAAAGGACGTTTCAATGAAGAAAGTTACGAGACTCGGAGGATGCAAGTCGACAAGAGCGAGGATAGCAGTAGCGGTAGTGATAGCGGCA GCTCCTCGGCTGAGTCTGATGAGGATGCTGCTGCACTGGCAGAAGAGTCGGACGATAATGCTGCCGAAGAAGAGGACGATAATGCTGCCGAAGAAGAGGG GTACGAACAACCGGAAGCTTGGAACCGGGGATTTGATGCAGGCGGAAAATCCAACTCCAACGGTTGGAGAGAGAACTCGGTAGAGGGGAGCGACCAGGAG GACCAAGAAGGAGCCTCCAGCGATGCTGCTGCTTCCGGGGACGAAAACAGGAATGGAGTCGAAGATGAAGAGATGGTGGAAGAGGAGGATTCTGGCAATG AAGAAATGTCGGATGGTTCCGGTGAGGAAGGAGAGGATGATGATAAAGTGGCGAGGAACAGCGATGATGCTAGAGATAGTGACGATTCAGGAGAGGATGA TAAAGTGGCAAGAAACGACGATGCGGGAGATAGTGACGATTCGGGAGAGTCAGATGAGTACAGCAGCAACGAGTAG
AA sequence Show only first row Show all	>Lus10015325 pacid=23178734 polypeptide=Lus10015325 locus=Lus10015325.g ID=Lus10015325.BGIv1.0 annot-version=v1.0 MDSNSDGEDYQSRKPNKGVASGSGGGGGGGDGKPKRQMKTPFQLETLEKAYSVETYPTEATRIELAKKLGLADRQLQMWFCHRRLKDRREEKKEEKKVEK KEEKTPAKKPRKALPMPESPVEDVKAEVPDHGSNYGSGSGSGSSPCTDPRRMPVADVPMSRGYKEPPRQSAILVRAIACVEAQLGEPLREDGPILGIEFD TLPPDAFGAPIAAVVEEQKRYSYEEKIVQRREGKSKKASGRVVHEYQFLQDQSSIRPDTYRQVTQHSYHDTPADTSMRRTSTSVRGDERLPRVHGIQTPA SRVRLLSAHEGKSHLLPSPQRDDDYLPQAHPFQNHRISGESTSHHMLAPENTSVFQDANVFHGESDFMTEKKPKIKNEEARLREAEAQESRTRKEIEKQD LLRRRNEERMRKEMERQDRERKKEEERLIRERQRDEEKSLREQKRELERREKMLQKEYLRAEKQKQRDEQRKEREEVRRKAAIEKATARRIAKESLDLIE DEQLELMELAAANKGLSSIVQLDYNTMQTLDAFRDSLCTFPSESIQLKKPFSFQPWVDSEDNVGNLLMIWRFCITFADVLGLWPFTLDEFIQALHDYDSR LLGEIHISLLKLIIKDIEDGGRAPTGLGTNQYSVANPEGGHPQIVEGAYMWGFDIRKWQQLLNPLSWPEILRELALSAGFGPQLRDKNAAWRHSNDEANR YQETVLNLRNGLAAENAFALMREKGLLNPRKSRHRLTPGTVKFAAFHVLSLEGSEGLTLIELADKIQKSGLRDFSTSRTPEASISVALTRDQKLFERVAP STYCLRDPYRKDPADGEAILAEARKKMYVFANGFLEEEDADEVADDVERDDDSEAEADDDPEVDDLSTPLHADKIVGQANGVHTPFGNDNDDEKENGPTE IENDDPHIWSSLIVKSESENDLSRFPENGARETSTPGTIDQFADRNPLVGNAKEENVEIDESKFGESWVQGLAEGEYSHLSVEERLDALFKLVGIANEGS IIRSVLEDRLEAATALKKQMWAEAQSDRSHLRDDVIQILEVPSGNPSPSHQADDFKDASRNIIEEQKLLLTSENVQNGNFHDDRTAAVQDLQLGYSSKRF RSQLKAYTAHVAEETYIYRSLPLGQDRRRNRYWLFVASASHSDPCSGRIFVELQNGTWRVIDSEKEFDALLSSLDSRGIRESHLRLMLKKIEMSFKDTVR TSLQSSKSMEEEVSLRDSSPNCSAGTESPSSLVCGTNSNLHDVFSLFRIEIGRNEREKRGVLRRYQDLQMWIWKESLSPTASCAMKFGKKRSRQLLDACD SCLDSYASEDCHCIFCHQTFGGGNFDFGEHEAICSKRSKPDPTDACGSNPSLPLGINLLKALLASIEAFVPAEALESFWTESHRKSWSRRLAALSSIEEL LQMLSAFESAIKPDFLSPNYESTKELLGITTLNEKSDLASVRVLPWIPRTMSAVALRLFELDASIIYVKQEKDMPSDDNLDTLVTKQHQAYSLVEQENFK EEVAVNPPSKSNVGKRRRVKSNLGRVSKKQRRRTPTHRPPSQTSSRKSQAANNQRQGIVAASRREVNIQEPSRGPRTVRKRRPESVNARGEQFIGHATER MPPPKGRFNEESYETRRMQVDKSEDSSSGSDSGSSSAESDEDAAALAEESDDNAAEEEDDNAAEEEGYEQPEAWNRGFDAGGKSNSNGWRENSVEGSDQE DQEGASSDAAASGDENRNGVEDEEMVEEEDSGNEEMSDGSGEEGEDDDKVARNSDDARDSDDSGEDDKVARNDDAGDSDDSGESDEYSSNE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10015325 [exp]	0	1
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10025454 [exp]	1.0	0.8985
AT5G52530			dentin sialophosphoprotein-rel...		Lus10014955 [exp]	2.2	0.8766
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10015727 [exp]	3.2	0.8973
AT3G02890			RING/FYVE/PHD zinc finger supe...		Lus10020350 [exp]	3.5	0.8893
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Lus10024965 [exp]	6.0	0.8908
AT1G13940			Plant protein of unknown funct...		Lus10034722 [exp]	6.9	0.8335
AT4G26450		WIP1	unknown protein		Lus10008342 [exp]	9.5	0.8573
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10011863 [exp]	10.4	0.8532
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10038106 [exp]	11.3	0.8578
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10007120 [exp]	11.5	0.8554

Compare expression of checked genes

Lus10015325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.