Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46080 271 / 4e-89 Protein kinase superfamily protein (.1) AT5G13160 160 / 3e-45 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G02800 155 / 8e-44 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G59420 159 / 3e-43 ACR4 crinkly4 (.1) AT3G13380 155 / 8e-42 BRL3 BRI1-like 3 (.1) AT3G07070 150 / 9e-42 Protein kinase superfamily protein (.1) AT1G55610 155 / 1e-41 BRL1 BRI1 like (.1.2) AT1G61860 149 / 1e-41 Protein kinase superfamily protein (.1) AT3G20530 149 / 2e-41 Protein kinase superfamily protein (.1) AT4G39400 154 / 3e-41 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025455 [exp] 576 / 0 AT5G46080 276 / 3e-91 Protein kinase superfamily protein (.1) Lus10015756 [exp] 163 / 5e-46 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10011148 [exp] 155 / 7e-44 AT3G20530 560 / 0.0 Protein kinase superfamily protein (.1) Lus10033533 [exp] 160 / 2e-43 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10012814 [exp] 156 / 4e-43 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 155 / 5e-43 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10020835 [exp] 158 / 1e-42 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10043050 [exp] 151 / 3e-42 AT3G20530 561 / 0.0 Protein kinase superfamily protein (.1) Lus10041426 [exp] 150 / 6e-42 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G058300 [exp] 311 / 5e-105 AT5G46080 327 / 4e-111 Protein kinase superfamily protein (.1) Potri.004G049200 [exp] 306 / 4e-103 AT5G46080 321 / 4e-109 Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 164 / 2e-46 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 162 / 6e-46 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.006G133300 [exp] 156 / 5e-44 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.010G021500 [exp] 158 / 7e-44 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.011G000500 [exp] 155 / 7e-44 AT3G20530 481 / 2e-170 Protein kinase superfamily protein (.1) Potri.011G137000 [exp] 155 / 1e-43 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 154 / 2e-43 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.011G169600 [exp] 159 / 6e-43 AT1G55610 1500 / 0.0 BRI1 like (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10015326 pacid=23178737 polypeptide=Lus10015326 locus=Lus10015326.g ID=Lus10015326.BGIv1.0 annot-version=v1.0 ATGAACAACAACACGGTGGAGCAAATATCATACGACTTCGTCCTCGCCCTTCTCTCAATAATCCTAATCCTCCTCATCATCTCCCTCTTCCTCTCCTGCC GAAACCGATTAACCCATCTCGAAAACCAATCCGAAACCCGACTCGAAAACCCCCCACCCCATCCTCCTCCTCCTTCCGCCAGAGTATACAATTTCACCGA CATCAATACAGCCACCGACGGGTTCAACCCACAACGGATAATCGGCAGAGGAAACACAAGCACAATATACGCCGCCGTTTTGTCGCGAAACGACGACGTC GTGGTGGCGGTGAAAAGAATACACCCGACACTCGTTCTACGAAATGCCTCGCTGGGATTTTCAGCAACAATCAAGAGTACTCTGTTTTCTTCTTCCTCTG CCCACCCGAACGTCGTCGGTATGTTGGGTTACTGCCAGGCTCCAGGGGAGAGGGTCGTGGTGATGGAATTCATCGGGATGGTGAATTTGGATTGCCTGTT GCATGATTCTAAAGAAGGGAAATTGTTGCTGGATTGGAATAGACGATTGAGGATCGCGGCAGGGGTTGCGAGGGGAATCGAGTACTTGCATGAGAAGATG GGTTCTTCGGGGATCGTCCATGGATGTGTGAAGTCGTCCAAGGTTTTGCTCGACGGCGAATTGAATCCCAAGATTTGTGACTATGGCATGTGGTTCCTGA AGGCGAACAATCAAGCCAGTGGTGGGGGGTACGTAGACGAAGAGTATTGGAAATCAGGGCCGTCGAAGGAGAGCGATGTTTACGGGTTCGGAGTGGTGCT ACTAGAGCTTCTGACGGGGAGGAGGGCAGCGGGGACTGCAGAACTGGCGAAATGGGCTGTCCCATTGATGAAAGAGTCGATGTTCAGTGAGATTTTGGAT CCGAGACTCGCCGTAAGGACTAGCGATGTGAATGTGGTTGTTAGGCTGTGTAAAGTTGCTTCGGCTTGTGTTAGTAACTGTCGGATGAGCCGGCCGACGA TCGTTCAGGTGGCCGCCATTCTCAACTGTCTTGAGAGGGATTCTTGTTGTTAG
AA sequence Show only first row Show all	>Lus10015326 pacid=23178737 polypeptide=Lus10015326 locus=Lus10015326.g ID=Lus10015326.BGIv1.0 annot-version=v1.0 MNNNTVEQISYDFVLALLSIILILLIISLFLSCRNRLTHLENQSETRLENPPPHPPPPSARVYNFTDINTATDGFNPQRIIGRGNTSTIYAAVLSRNDDV VVAVKRIHPTLVLRNASLGFSATIKSTLFSSSSAHPNVVGMLGYCQAPGERVVVMEFIGMVNLDCLLHDSKEGKLLLDWNRRLRIAAGVARGIEYLHEKM GSSGIVHGCVKSSKVLLDGELNPKICDYGMWFLKANNQASGGGYVDEEYWKSGPSKESDVYGFGVVLLELLTGRRAAGTAELAKWAVPLMKESMFSEILD PRLAVRTSDVNVVVRLCKVASACVSNCRMSRPTIVQVAAILNCLERDSCC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46080			Protein kinase superfamily pro...		Lus10015326 [exp]	0	1
AT5G44390			FAD-binding Berberine family p...		Lus10001965 [exp]	6.0	0.9351
					Lus10018014 [exp]	6.3	0.9225
AT5G36160			Tyrosine transaminase family p...		Lus10033661 [exp]	11.0	0.9130
AT5G45230			Disease resistance protein (TI...		Lus10012247 [exp]	11.1	0.9279
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10019102 [exp]	11.3	0.9327
					Lus10038520 [exp]	19.5	0.9153
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10003805 [exp]	22.5	0.9103
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10012212 [exp]	25.2	0.9147
AT5G39150			RmlC-like cupins superfamily p...		Lus10033767 [exp]	27.2	0.9141
AT1G51700	DOF	ADOF1, AtDof1. ...	DOF zinc finger protein 1 (.1)		Lus10035504 [exp]	27.9	0.8766

Compare expression of checked genes

Lus10015326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.