Plant FIBer expression Database

Lus10015328 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G39200 412 / 8e-139 ATMLO12, MLO12 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1)
AT1G61560 403 / 6e-135 ATMLO6, MLO6 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4)
AT1G11310 393 / 3e-131 PMR2, ATMLO2, MLO2 POWDERY MILDEW RESISTANT 2, MILDEW RESISTANCE LOCUS O 2, Seven transmembrane MLO family protein (.1.2)
AT3G45290 350 / 2e-115 ATMLO3, MLO3 MILDEW RESISTANCE LOCUS O 3, Seven transmembrane MLO family protein (.1)
AT2G33670 331 / 5e-108 ATMLO5, MLO5 MILDEW RESISTANCE LOCUS O 5, Seven transmembrane MLO family protein (.1)
AT2G17430 318 / 1e-102 NTA, ATMLO7, MLO7 NORTIA, MILDEW RESISTANCE LOCUS O 7, Seven transmembrane MLO family protein (.1)
AT5G65970 314 / 1e-100 ATMLO10, MLO10 MILDEW RESISTANCE LOCUS O 10, Seven transmembrane MLO family protein (.1)
AT2G17480 313 / 4e-100 ATMLO8, MLO8 MILDEW RESISTANCE LOCUS O 8, Seven transmembrane MLO family protein (.1)
AT1G42560 306 / 5e-99 MLO9, ATMLO9 ARABIDOPSIS THALIANA MILDEW RESISTANCE LOCUS O 9, Seven transmembrane MLO family protein (.1)
AT4G02600 298 / 5e-95 MLO1, ATMLO1 MILDEW RESISTANCE LOCUS O 1, Seven transmembrane MLO family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025457
[exp]
869 / 0 AT1G11310 432 / 2e-146 POWDERY MILDEW RESISTANT 2, MILDEW RESISTANCE LOCUS O 2, Seven transmembrane MLO family protein (.1.2)
Lus10040388
[exp]
392 / 1e-130 AT2G39200 735 / 0.0 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1)
Lus10041410
[exp]
386 / 4e-128 AT1G61560 769 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4)
Lus10023506
[exp]
386 / 1e-127 AT2G39200 731 / 0.0 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1)
Lus10036519
[exp]
384 / 3e-127 AT1G61560 763 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4)
Lus10036121
[exp]
349 / 2e-114 AT3G45290 542 / 0.0 MILDEW RESISTANCE LOCUS O 3, Seven transmembrane MLO family protein (.1)
Lus10019630
[exp]
333 / 2e-107 AT2G17480 711 / 0.0 MILDEW RESISTANCE LOCUS O 8, Seven transmembrane MLO family protein (.1)
Lus10036120
[exp]
331 / 4e-107 AT1G61560 599 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4)
Lus10030729
[exp]
321 / 5e-104 AT2G33670 628 / 0.0 MILDEW RESISTANCE LOCUS O 5, Seven transmembrane MLO family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G058900
[exp]
562 / 0 AT1G61560 445 / 2e-151 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4)
Potri.004G050000
[exp]
555 / 0 AT2G39200 490 / 4e-170 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1)
Potri.011G059200
[exp]
542 / 0 AT2G39200 424 / 2e-143 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1)
Potri.009G011900
[exp]
413 / 1e-138 AT1G61560 603 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4)
Potri.008G041400
[exp]
399 / 1e-133 AT1G61560 768 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4)
Potri.010G220500
[exp]
387 / 9e-129 AT1G61560 743 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4)
Potri.016G088000
[exp]
383 / 1e-128 AT1G61560 576 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4)
Potri.007G064200
[exp]
380 / 2e-126 AT2G39200 502 / 4e-173 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1)
Potri.006G129700
[exp]
343 / 1e-112 AT3G45290 505 / 1e-175 MILDEW RESISTANCE LOCUS O 3, Seven transmembrane MLO family protein (.1)
Potri.007G064300
[exp]
340 / 9e-111 AT2G17480 669 / 0.0 MILDEW RESISTANCE LOCUS O 8, Seven transmembrane MLO family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03094 Mlo Mlo family
Representative CDS sequence
>Lus10015328 pacid=23178752 polypeptide=Lus10015328 locus=Lus10015328.g ID=Lus10015328.BGIv1.0 annot-version=v1.0
ATGGGTGGTGAAGCTAGTGGTGAAATACCAGTGGAGGCAACACCAACATGGGCTGTAGCAACTGTTTGCTTCTTCCTCTTACTCATCTCCATAGCCTTCG
AGCATTTGATCCATCTCATCTCCAAGAATTTCACAAAGAGAAGGAGCAAAGCACTTCTGAGGGCATTGGACAAGATCAGATCTGAAATGATGCTGTTGGG
TTTCATATCGCTGTTGCTTGCCGTATCCCAAAAGATGATAGCCAACATTTGCATTCCACGAAGCATCGGAGAAACTTTCCTTCCTTGCGGGTTTCGTCCT
GATCATGCTTCGAGCCACGTCGAGGAGGAGGCCAAATGCGAAGCTCAGGGGAAAGTTTCGTTGTTGTCGAGGCATGGTGTTATGCAACTTAATTACATGA
TGTTCGTGCTGGCTACGTTTCATGCCATGTCGTGCACCCTCATCTTCGGCTTAGGGATGGCCAAGATGCGACGATGGGCTTCATGGGAGGCTGAGACACA
GGCTCTTAAATACCGTTCCTCGAATGATCCACGAATGAACCGGCTGGCTCATCAGACTTCATTCGGGAGGAGGCATCTTAGCTTCTGGAGTGAACGCCGG
ATCCTTCGTTGGACGACATGTTTTACGAGGCAATTTGTTGTGTCGGTGACAAAGGGAGACTACCTCACACTACGATACGGATTCATCATGGCCCATTTTG
AGCAAGAAATCGGCTATAACTTTCAGAAATTCGTAAAACGAGCTATGGAACGAGACTTCCGTGTTGTAGTCGGGACAAGTCTATGGATCTCGACTTTCGC
TGTACTTTCTATATTCTTCCAAGCACACAGATTCCACAGTTTCATGTGGCTTCCATTTGTTCCATTGGTGATGTTACTTGTGATTGGTGCTAAACTACAA
GACATTATAACTTCAATGTGCTTGGAGAGTAGCCATGGGAAATCCTTGCAGGTTGTCAATGGAACTCTGCTTGTTAGACCAAGTGATGGTTTCTTCTGGT
TTGGTTCTCCCAAATTCATCCTCCACCTCATCCACTTCATCATCTTTCAGAACTCCTTTCAATTGGCATTCTTCACCTGGACATCGAAAAATTTCGGGTT
GAGGTCGTGCTTCCACAGAGAAACAGAAAACATAACGATAAGGGTGTTTGTTGGGATACTTGTACACTTCCTTGCCGGCTACGTCACTCTCCCTTTATAT
GCTCTGGTCACCCAGATGGGGAGTTCAATGCGGAAGAGTGTCTTCCCCTCGGTGGTGGTTGTTGGACTACGAAGGTGGAGGCGCAAGGCGAGGAAGAGTC
TGAAGAATAAGAGGAAGTACAATTCTATTGCGGCGATGGTGGAGGCGGGTAATCTGGATGGTGAGAATTCTATTCGGAGTTCGGTTGTTTCTCTTGGTAC
TTCGATATCGTTCGATTCGTTAGATTCGGATGGTGAAAGGGAATCAGAATCAGAATTGGAATCGGAATCAGAAGCGGAAGTTGTGGTGGTTGAAGTGAGA
AGCGAAGAGGAGGTGCGGCGGAGGGAAGATTGA
AA sequence
>Lus10015328 pacid=23178752 polypeptide=Lus10015328 locus=Lus10015328.g ID=Lus10015328.BGIv1.0 annot-version=v1.0
MGGEASGEIPVEATPTWAVATVCFFLLLISIAFEHLIHLISKNFTKRRSKALLRALDKIRSEMMLLGFISLLLAVSQKMIANICIPRSIGETFLPCGFRP
DHASSHVEEEAKCEAQGKVSLLSRHGVMQLNYMMFVLATFHAMSCTLIFGLGMAKMRRWASWEAETQALKYRSSNDPRMNRLAHQTSFGRRHLSFWSERR
ILRWTTCFTRQFVVSVTKGDYLTLRYGFIMAHFEQEIGYNFQKFVKRAMERDFRVVVGTSLWISTFAVLSIFFQAHRFHSFMWLPFVPLVMLLVIGAKLQ
DIITSMCLESSHGKSLQVVNGTLLVRPSDGFFWFGSPKFILHLIHFIIFQNSFQLAFFTWTSKNFGLRSCFHRETENITIRVFVGILVHFLAGYVTLPLY
ALVTQMGSSMRKSVFPSVVVVGLRRWRRKARKSLKNKRKYNSIAAMVEAGNLDGENSIRSSVVSLGTSISFDSLDSDGERESESELESESEAEVVVVEVR
SEEEVRRRED

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G11310 PMR2, ATMLO2, M... POWDERY MILDEW RESISTANT 2, MI... Lus10015328
[exp]
0 1

Lus10015328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.