Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	No hit found
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015331 pacid=23178797 polypeptide=Lus10015331 locus=Lus10015331.g ID=Lus10015331.BGIv1.0 annot-version=v1.0 ATGGACTGCAAGAAGTTCATCCAGCTGGTGCAGGAGAAGAAGAAGAAAGCTTTGGAGAAGAAGGAAGCTCGTCTGCAGTGGGAGCAGAAGCTAGAAGCTG CTGCAAAGGCAAAGGCCAATGCTGAACGCCGAGAAAAGAAGCCCAAGGCCTCCAAGCACAAAACACCCAAGAGAAAGCATAGGAGAAGGTCTTTGGACTC GAGCGATGATGATAATGACAGTGAAGAGCACGAGAGTGAGTTTGAGGATGTGAGGAAGCGAAAGAAGAGAAGCCACAGGAAGCACCGATCCCATGGTAGG AAATCCAGTTCTACTGATACTGATTCGTACAGTGATAATGATTCTTCAAGTGAGGATGAGAAAGGTGCAGCTAGGAAGAGTCACTTGAAGCATCATCACA AACATCATAGAAGGTCGGTGTCTAGCGAAACAGATTCATCTACCGATGAGGAAAGGAAGAGGCATGCTAAACGTCGTAAACGGTCCCATAGCGTGGACTC TATCGATTCTGGTGGCCATAGGCATCGTCGGAGTAGGTCTCGGTCCTCGGGGGATTCATCAGATGAGGATAGAAGGAAGCATTCAAGGCATGGAAAATCT GGTCGAAGCTCCTGA
AA sequence Show only first row Show all	>Lus10015331 pacid=23178797 polypeptide=Lus10015331 locus=Lus10015331.g ID=Lus10015331.BGIv1.0 annot-version=v1.0 MDCKKFIQLVQEKKKKALEKKEARLQWEQKLEAAAKAKANAERREKKPKASKHKTPKRKHRRRSLDSSDDDNDSEEHESEFEDVRKRKKRSHRKHRSHGR KSSSTDTDSYSDNDSSSEDEKGAARKSHLKHHHKHHRRSVSSETDSSTDEERKRHAKRRKRSHSVDSIDSGGHRHRRSRSRSSGDSSDEDRRKHSRHGKS GRSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01100			unknown protein		Lus10015331 [exp]	0	1
AT2G01100			unknown protein		Lus10025460 [exp]	1.4	0.9414
AT4G33690			unknown protein		Lus10040497 [exp]	3.2	0.9365
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10038952 [exp]	7.3	0.9419
AT4G28240			Wound-responsive family protei...		Lus10039758 [exp]	12.0	0.9399
					Lus10006539 [exp]	14.5	0.9270
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Lus10030685 [exp]	17.9	0.9270
AT4G27130			Translation initiation factor ...		Lus10027181 [exp]	18.2	0.9302
AT3G15290			3-hydroxyacyl-CoA dehydrogenas...		Lus10020828 [exp]	18.3	0.9393
AT4G27130			Translation initiation factor ...		Lus10039660 [exp]	19.1	0.9205
AT5G03030			Chaperone DnaJ-domain superfam...		Lus10023494 [exp]	20.1	0.9201

Compare expression of checked genes

Lus10015331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.