Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30160 98 / 2e-25 ATVLN4, VLN4 villin 4 (.1.2) AT5G57320 92 / 3e-23 VLN5 villin 5, villin, putative (.1) AT3G57410 81 / 2e-19 ATVLN3, VLN3 villin 3 (.1) AT2G41740 77 / 4e-18 ATVLN2, VLN2 villin 2 (.1) AT2G29890 61 / 4e-12 ATVLN1, VLN1 villin 1, villin-like 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015333 [exp] 113 / 1e-30 AT4G30160 1395 / 0.0 villin 4 (.1.2) Lus10035450 [exp] 80 / 9e-19 AT2G41740 1402 / 0.0 villin 2 (.1) Lus10031066 [exp] 75 / 5e-17 AT2G41740 1320 / 0.0 villin 2 (.1) Lus10025461 [exp] 74 / 6e-17 AT4G30160 959 / 0.0 villin 4 (.1.2) Lus10005861 [exp] 53 / 2e-09 AT2G29890 1049 / 0.0 villin 1, villin-like 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G089700 [exp] 97 / 9e-25 AT4G30160 1464 / 0.0 villin 4 (.1.2) Potri.006G165300 [exp] 94 / 7e-24 AT4G30160 1507 / 0.0 villin 4 (.1.2) Potri.006G050200 [exp] 82 / 1e-19 AT2G41740 1340 / 0.0 villin 2 (.1) Potri.016G056200 [exp] 82 / 1e-19 AT2G41740 1248 / 0.0 villin 2 (.1) Potri.009G045000 [exp] 49 / 3e-08 AT2G29890 1101 / 0.0 villin 1, villin-like 1 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015332 pacid=23178771 polypeptide=Lus10015332 locus=Lus10015332.g ID=Lus10015332.BGIv1.0 annot-version=v1.0 ATGTCTGTCTCCATGAGAGACTTGGACCCAGCTTTTCAAGGAGCTGGACAGAAAGCTGGTCTTGAGATATGGCGGATCGAGAACTTTAATCCCGTTGCTA TTCCAAGTGCTTCGTATGGCAAGTTCTTTACAGGGGACTCCTACATAGTTTTGAAGCCATTAGGAAACTATGGAGTAATTCATGTTTTGTTCTTCATCTC TCTCCCTAATTCCCGCAGCTGCCTGGTAGTTAGCTGCTCAGATTGGATCTGGAACTCCTTCGAGACGAAGTGGTGGGAAAGATAA
AA sequence Show only first row Show all	>Lus10015332 pacid=23178771 polypeptide=Lus10015332 locus=Lus10015332.g ID=Lus10015332.BGIv1.0 annot-version=v1.0 MSVSMRDLDPAFQGAGQKAGLEIWRIENFNPVAIPSASYGKFFTGDSYIVLKPLGNYGVIHVLFFISLPNSRSCLVVSCSDWIWNSFETKWWER

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Lus10015332 [exp]	0	1
AT4G39420			unknown protein		Lus10014011 [exp]	1.4	0.9100
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Lus10015333 [exp]	2.6	0.9126
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Lus10039172 [exp]	11.7	0.8894
AT2G45540			WD-40 repeat family protein / ...		Lus10015857 [exp]	16.7	0.9031
AT3G08530			Clathrin, heavy chain (.1)		Lus10007499 [exp]	17.5	0.8916
AT3G63460		EMB2221	transducin family protein / WD...		Lus10005323 [exp]	19.1	0.9018
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10018731 [exp]	20.5	0.8543
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Lus10013101 [exp]	21.8	0.8978
AT3G63460		EMB2221	transducin family protein / WD...		Lus10016373 [exp]	22.9	0.8900
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Lus10026726 [exp]	23.5	0.8823

Compare expression of checked genes

Lus10015332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.