Gene [FLAX] | FIBexDB

External link

Symbol

Arabidopsis homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	TAIR10 short description
AT5G57200	307 / 8e-96	ENTH/ANTH/VHS superfamily protein (.1)
AT4G25940	298 / 4e-92	ENTH/ANTH/VHS superfamily protein (.1)
AT2G01600	293 / 9e-91	ENTH/ANTH/VHS superfamily protein (.1)
AT1G14910	294 / 9e-90	ENTH/ANTH/VHS superfamily protein (.1)
AT5G35200	229 / 4e-67	ENTH/ANTH/VHS superfamily protein (.1)
AT2G25430	145 / 2e-36	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
AT1G03050	139 / 1e-34	ENTH/ANTH/VHS superfamily protein (.1)
AT4G32285	139 / 2e-34	ENTH/ANTH/VHS superfamily protein (.1.2)
AT4G02650	129 / 4e-31	ENTH/ANTH/VHS superfamily protein (.1)
AT1G05020	125 / 6e-30	ENTH/ANTH/VHS superfamily protein (.1)

Paralogs

Show only best Show top 10

Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10025462 [exp]	553 / 0	AT4G25940	685 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Lus10034610 [exp]	291 / 8e-90	AT2G01600	765 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Lus10021796 [exp]	291 / 1e-89	AT2G01600	756 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Lus10013469 [exp]	286 / 9e-88	AT2G01600	758 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Lus10007933 [exp]	284 / 8e-85	AT2G01600	758 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Lus10038122 [exp]	240 / 6e-71	AT5G35200	714 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Lus10005184 [exp]	238 / 8e-70	AT5G35200	702 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Lus10003642 [exp]	199 / 5e-56	AT5G35200	380 / 2e-126	ENTH/ANTH/VHS superfamily protein (.1)
Lus10001502 [exp]	200 / 2e-55	AT2G25430	914 / 0.0	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)

Poplar homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.018G142800 [exp]	354 / 4e-114	AT5G57200	655 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.006G075800 [exp]	348 / 9e-112	AT2G01600	543 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.008G132100 [exp]	292 / 1e-90	AT2G01600	749 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.010G110000 [exp]	289 / 2e-89	AT2G01600	732 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.T124907 [exp]	236 / 2e-73	AT5G35200	357 / 4e-122	ENTH/ANTH/VHS superfamily protein (.1)
Potri.006G065100 [exp]	240 / 4e-71	AT5G35200	621 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.018G125284 [exp]	239 / 2e-70	AT5G35200	646 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.T125107 [exp]	237 / 7e-70	AT5G35200	644 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.006G255000 [exp]	190 / 6e-52	AT2G25430	866 / 0.0	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
Potri.018G128200 [exp]	166 / 2e-43	AT4G32285	626 / 0.0	ENTH/ANTH/VHS superfamily protein (.1.2)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0009 [flax] [poplar]	ENTH_VHS	PF07651 [flax] [poplar]	ANTH	ANTH domain

Representative CDS sequence

Show only first row Show all

>Lus10015335 pacid=23178731 polypeptide=Lus10015335 locus=Lus10015335.g ID=Lus10015335.BGIv1.0 annot-version=v1.0

ATGGGGACATTCACTCGCTTCAGGAAAGCTTATGGAGCTCTTAAAGACACCACCAAAGTTGGCATTGCAAAAGTTAATAGTGATTTCAAGGATTTAGATA

TTGCCATCGTGAAAGCCACCAATCATGTCGAATGCCCTCCTAAAGAGCGCCATGTTCGAAGGATTTTTTCTGCGACATTGGTGATCCGTCCTCGGGCAGA

TGTTGCATATTGTATTCATGCTCTTGCCAAGAGATTATCCAAGACTAAAAATTGGGTTGTTGCAATCAAGGTGCTAATTGTCATCCATAGGACACTAAGA

GAAGGAGATCCGACTTTCCGCGAAGAGCTTTTGAATTTCGCACAAAGAGGGAAGATACTTCAAATCTCGAATTTCAAAGATGATTCTGGCATGAACGCTT

GGGATTGCTCAGCGTGGTGTCGAGCATATGCACAATTCTTGGAGGAAAGACTGGAGTGCTTTAGGGTTTTGAAGTATGACATTGAAGCTGAACGACTCTC

TAAATCGTCTCCAAGTTTGTCCAAGGTTTGTCACTATATTGGGCCCACTCTATACGAGCCAAGTCGAGTTAAGCTTTACCATTCATTCAAGCTAGCTCGT

TCATCTTTAGGCAAACCTCGAGCTCTAGGTCTAGCAAGTACATTAAAAACTCGTGCTCAAGCTCGAGCTAATTCATGCTCAGCCCCCACTACTAACCATT

GCCGAGCCAAACTCAAACTCAAACCTGCTAATAACCCTCGACGAGTTTGTCCGGTGAATACTAGAACTCGGATTCTGAATCGAACCGAGTTGTTGGACCA

ATTACCAGCTCTACAGCAACTTCTATACCGCCTCATCGGTTGCCAACCAGAAGGAACAGCCTACCGTAATTATCTGGTTCAGTATGCTTTGGCTTTGATC

TTGAAAGAAAGTTTCAAAATTTACTGCGCAATCAATGATGGCATCATTAACCTTGTCGATATGTTCTTTGATATGTCAAGACATGATGCCATCAAAGCAC

TAACAATATACAGGAGAGCAGGCCAACAGGCTGAAAATCTTGCTGAATTTTATGAGCAATGCAAAGGGTTGGATCTTGCCAGGACCTTCCAATTCCCAAC

ACTCAGACAGCCACCTCCATCATTTATTGCCACAATGGAGGAGTACATTAAGGAGGCACCTCAGTCCGCTCCAGTACATAAAAGAGTGGAGTATAGTGAG

GGAGAAGACGAAGAAGACGACGACGAAGAACAAGCAGAAGAACCTCCAGCACCAGCACAAGTAGAAGCAGAAGAAACAAGTGAACCAGAGAAAGCTGAAG

AACCAGAAGAAAAAGTAGTACAAGAACCACTAATACCAACTGATGGCACTGATGATCTTTTGGGGTTGAGTGAAATTAATCCGAAAATAGCTGAACTTGA

TGAAAACAATGCACTAGCTCTCGCAATCCTTCCACCCGGCCAAGAAGCTTCAACATCATCAAACAACATGCTGGCTGAACTCGGCCAGCCAAATGCAACC

GGATGGGAGCTAGCACTCGTCACTGCACCGAGCAACCAAGCTCGAAACAATCCTCCGGCACAGACCAAAATGGCTGGCGGATTCGACAAGCTGCTCTTAG

ACAGCTTGTACGAAGACGAAACCGCCAGGAAGCAGATTGAGCTGACCAACGCTGGATACAGGTCGCATGGCGGGGGAGGAGGAGGATCGTTAGTCTCGAT

GCAGAGTCCGTACGATCAACATCAGCAACAACAGCACGACCCGTTCATGATGTCGAATAGTATAGCCCCACCTACGAACGTCCAGCTGGCAATGACGGCT

CAACACATGCAGCTCTACTCGTGGCAGCAACATCAGCAGCAACAATTGTCGTCGCCAGTGGTGCCTTTTCAAGGTATGGACCCGTATCAGCAGCATCAGA

TGACGGACTTGAACCCGTTTGGGGATCCGTTTTCAAGTTTGAGTAGTGGAGCGCAGAATCATTTTCGACAGAGCGATAATCGTATGTTGTTGTAG

AA sequence

Show only first row Show all

>Lus10015335 pacid=23178731 polypeptide=Lus10015335 locus=Lus10015335.g ID=Lus10015335.BGIv1.0 annot-version=v1.0

MGTFTRFRKAYGALKDTTKVGIAKVNSDFKDLDIAIVKATNHVECPPKERHVRRIFSATLVIRPRADVAYCIHALAKRLSKTKNWVVAIKVLIVIHRTLR

EGDPTFREELLNFAQRGKILQISNFKDDSGMNAWDCSAWCRAYAQFLEERLECFRVLKYDIEAERLSKSSPSLSKVCHYIGPTLYEPSRVKLYHSFKLAR

SSLGKPRALGLASTLKTRAQARANSCSAPTTNHCRAKLKLKPANNPRRVCPVNTRTRILNRTELLDQLPALQQLLYRLIGCQPEGTAYRNYLVQYALALI

LKESFKIYCAINDGIINLVDMFFDMSRHDAIKALTIYRRAGQQAENLAEFYEQCKGLDLARTFQFPTLRQPPPSFIATMEEYIKEAPQSAPVHKRVEYSE

GEDEEDDDEEQAEEPPAPAQVEAEETSEPEKAEEPEEKVVQEPLIPTDGTDDLLGLSEINPKIAELDENNALALAILPPGQEASTSSNNMLAELGQPNAT

GWELALVTAPSNQARNNPPAQTKMAGGFDKLLLDSLYEDETARKQIELTNAGYRSHGGGGGGSLVSMQSPYDQHQQQQHDPFMMSNSIAPPTNVQLAMTA

QHMQLYSWQQHQQQQLSSPVVPFQGMDPYQQHQMTDLNPFGDPFSSLSSGAQNHFRQSDNRMLL

DESeq2's median of ratios [FLAX]

Coexpressed genes

Download tab-delimited text

Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25940			ENTH/ANTH/VHS superfamily prot...		Lus10015335 [exp]	0	1

Lus10015335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Lus10015335 [FLAX]

DESeq2's median of ratios [FLAX]

Coexpressed genes

Lus10015335 coexpression network