Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14950 1432 / 0 GMII, ATGMII golgi alpha-mannosidase II (.1) AT3G26720 239 / 4e-65 Glycosyl hydrolase family 38 protein (.1.2) AT5G13980 236 / 3e-64 Glycosyl hydrolase family 38 protein (.1.2.3) AT5G66150 230 / 8e-62 Glycosyl hydrolase family 38 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039457 [exp] 1757 / 0 AT5G14950 1573 / 0.0 golgi alpha-mannosidase II (.1) Lus10014507 [exp] 1603 / 0 AT5G14950 1552 / 0.0 golgi alpha-mannosidase II (.1) Lus10032179 [exp] 1471 / 0 AT5G14950 1265 / 0.0 golgi alpha-mannosidase II (.1) Lus10012578 [exp] 237 / 6e-64 AT3G26720 1405 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Lus10035111 [exp] 232 / 3e-62 AT5G13980 1467 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10036074 [exp] 219 / 3e-58 AT5G13980 1372 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10012577 [exp] 184 / 7e-47 AT5G13980 1483 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10014259 [exp] 146 / 3e-35 AT3G26720 959 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Lus10025960 [exp] 126 / 5e-29 AT5G66150 1097 / 0.0 Glycosyl hydrolase family 38 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G350400 [exp] 1534 / 0 AT5G14950 1678 / 0.0 golgi alpha-mannosidase II (.1) Potri.017G073900 [exp] 1524 / 0 AT5G14950 1672 / 0.0 golgi alpha-mannosidase II (.1) Potri.008G117400 [exp] 423 / 3e-138 AT5G14950 470 / 1e-157 golgi alpha-mannosidase II (.1) Potri.007G056300 [exp] 244 / 2e-66 AT5G66150 1428 / 0.0 Glycosyl hydrolase family 38 protein (.1) Potri.012G106500 [exp] 234 / 2e-63 AT5G13980 1437 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.014G143600 [exp] 234 / 3e-63 AT5G13980 1535 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.002G238200 [exp] 228 / 3e-61 AT3G26720 1477 / 0.0 Glycosyl hydrolase family 38 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0158 [flax] [poplar] GH_CE PF01074 [flax] [poplar] Glyco_hydro_38N Glycosyl hydrolases family 38 N-terminal domain CL0103 [flax] [poplar] Gal_mutarotase PF07748 [flax] [poplar] Glyco_hydro_38C Glycosyl hydrolases family 38 C-terminal domain CL0599 [flax] [poplar] GH57_38_middle PF09261 [flax] [poplar] Alpha-mann_mid Alpha mannosidase middle domain
Representative CDS sequence Show only first row Show all	>Lus10015337 pacid=23160904 polypeptide=Lus10015337 locus=Lus10015337.g ID=Lus10015337.BGIv1.0 annot-version=v1.0 ATGCCACTGTCTTCTTACATTGGTTCCCGTCGGGGAGGAGGAAGTGTCGGCGGAAGCGGCAGCGGTTGGCCGCAATCGATCCTTCCTACGTCTACTACCA GTAAGTCCAAGCTCATCCCGTCGAGAAAACCTAGGAAACGCGGGGCTCTGATAAACTTCCTTTTCACTAACTTCTTCACCATCTCGCTCTCGATCTCTCT CCTCTTCCTGTTCTTCACCGTCCTGCACTTCGGCTTCCCCAAACCGCTATTTTCTTCTGCGTTCAGTTCGATGCCATCTCCTCCAGTTCGGCAGCGGAAG ACGACTGTCAGGAGAAATTCAATTCAGAACGGTATGAGTAATGGGACAACTGTCGATTTAACTACAAAGGATTTGTACGATAAGATCAAGTTCTTGGATA AGGATGGCGGTCCGTGGAAGCAAGGATGGAGAGTAAGCTATCGAGGGAATGAGTGGGATGATGAAAAGTTGAAGGTTATCGTGATGCCTCACTCGCATAA TGATCCCGGTTGGAAGCTTACTGTTGATGAGTACTACGAGAAGCAGTCGAGGCATATACTCGACACAATTGTGGAAACGCTTTCTAAGGATGTTCGGAGG AAGTTCATATGGGAAGAGATGTCTTATCTTGAGAAATGGTGGAGAGATGCATCTGAGGGGAAACGAGCATCTTTCACCAAACTGGTTAAAAATGGCCAGT TAGAAATTGTAGGTGGTGGTTGGGTGATGAACGATGAGCTTACTGTTGATGAGTACTACGAGAAGCAGTCGAGGCATATACTCGACACAATTGTGGAAAC GCTTTCTAAGGATGTTCGGAGGAAGTTCATATGGGAAGAGATGTCTTATCTTGAGAAATGGTGGAGAGATGCATCTGAGGGGAAACGAGCATCTTTCACC AAACTGGTTAAAAATGGCCAGTTAGAAATTGTAGGTGGTGGTTGGGTGATGAACGATGAGGCGAATTCCCACTTCTTCTCGATAATTGAACAGATTACAG AAGGGAACATTTGGTTGAACGACACTATTGGTATCATTCCGAAGAATTCTTGGGCAATAGATCCCTTTGGTTATTCTTCGACTATGGCATACCTTCTTCG CCGTATGGGGTTTGAGAATATGCTAATTCAGAGGACTCATTATGAGCTTAAGAAGGAACTTGCTTTGCATAGAAATTTAGAGTTTGTTTGGCGGCAGAGT TGGGATGCGGGTGAAACTACAGACATTTTTGTGCACATGATGCCTTTCTATTCTTATGATATTCCACATACATGTGGGCCAGAACCTGCAATTTGTTGTC AGTTTGATTTTGCCCGAGTGCCTGGCTTCTTCTATGAGTTATGTCCTTGGCACCAGAACCCAGAGGAGACCACTCCAGAAAATGTGCATGAGAGGGCTAA GTTGCTGCTGGATCAATACAAGAAGAAGTCAGTATTATATCGAACAAATACTCTGCTTATTCCTCTTGGGGATGATTTCCGATATGTAACTGTCGATGAA GCTGAGGCCCAGTATCGTAATTACCAAATGTTGTTTGATCACATCAATTCAAACCCTAGTCTAAATGCTGAGGCAAAATTTGGTACTCTAGATGATTACT TCCAAGCGCTACATGAGGAGTCCGACAGAAAAAATTACTCAGTTCCTGGCGAAATTGGATCTAGTCATATTGGAGGTTTTCCTTCTCTATCTGGGGATTT TTTCACTTATGCTGATAGGGAGCAGGATTATTGGAGTGGCTATTATGTTTCAAGGCCTTTTTTCAAAGCTGTTGATCGGGTCCTAGAGCAAACATTACGT GCTACCGAAATGATGGTGGCTTTGTTCGTTGGCCATTGTCAAAGGCTGCAGTGTGAAAAGTTGGTTATAGGGTTTAGCCACAAGTTGACAGCTGCTAGGA GGAATTTAGCTCTTTTTCAACATCATGACGGGGTAACAGGCACAGCTAAGGATCACGTTGTTCGGGACTACGGGATGCGAATGCATACTTCTTTGGAAGA TCTTCAGATCTTCATGTCTAAGGCTATTGAAGTACTTCTTGGCATGCACTTGGAGAAACTTGATCTGAACCCTGCTAAGTTTGAGGCCGAACAAGTAAGG GCTAAGTACAATGTTCAACCAGTGCATAAAGCCTTAAGTCCTAGTGAAGGTACTGCACAATCGGTGGTTCTATTTAATCCCACTGAGCAAGTGAGAGAAG AAGTCGTTATGGTTGTTGTTAATAGACCAGATGTCACTGTTCTGGACTCAAACTGGACCTGCGTCCAAAGCCAGGTATCTCCGGAGCTGCAACATGATGG TAACAATATATTTAGTGGGCGGCACCGAGTCCACTGGAAAGCTTCTGTCCCGGCAATGGGACTGGAAACATATTACGTTGCCAACGGCTATGTGGGATGT GAAAAAGCAAAACCAGCCAAACTAAAGTACGTCTCTCCAAATTCCTTTTCTTGCCCCACTTCATATGCTTGTTCCAAGGCAGCAGGTGATTGGGCAGAAA TCCAAAATGGACAGCAAACTCTTACCTTCAACATCAATCATGGGTTATTGCAGAATGTAAAACATAAAAATGGTTCTAGCTATGTTATGGCAGAAGAAAT AGGAATGTATTCTAGTGATGGAAGTGGTGCATACTTGTTTAAACCCATTGGAGATGCTAAATCTATCATCCAAAACGATGGGATAACAGTCATCACAGAG GGTCCACTGATGCAGGAGGTTTTCTCATATCCGAATACAGCGTTTCGAAGGAATCCCGTCTCCCACAGTACTCGTATTTATAATGGAGGCAATACTGTAC AGGAGTTTGTTGTAGAAACTGAATATCATGTTGAGCTTCTTGGCGATGAGTTCAATGACCGTGAATTGATAGTTCGATACAAGACAGATATTGATAATAA GGGGGTATTCTACTCTGATTTAAATGGGTTTCAGATGAGCCGCAGAGAAACATATGATAAGATTCCATTGCAAGGAAATTACTATCCGATGCCTTCATTG GCATTTATCCAAGGATCTAACGGTGACAGGTTTTCTGTCAATTCCAGACAGTCCCTGGGCGTGGCAAGTCTTAAAGATGGCTGGTTAGAGATTATGGTTG ACCGTCGTTTGCTAAGAGATGATGGGCGTGGGCTTGGGCAAGGGGTGACGGATAACCGCCCTATGAATGTGGTATTTCACCTGCTTTTCGAGACCAACAT TTCGTCAACATCAAACCCAGTCAGCAATCCGGTTCCCTTGAGCCCATCTCTTCTTTCTCATCGTATAGGTGCACATTTGAACTATCCCTTATTTGCCTTC ATTTCAAAGGACCACGAGGAGTTATCTCTTCAGACATACGGCAGATCATTCTCCCCTTTAGCTGCATCATTGCCGTGTGACTTGCACATTGTGAATTTCA AAGTTGCCCGGCCAGCACTGTTCTCTCGTGAGCTGGTCGGAGATCCTAGGTTTGTTAGAGATCCTAGGTTCATTCTGATCTTCCAGAGGCGGCAATGGGA TGCTTCCTACTGCCGGACGGGAAGATCCCAGTGCACAAGATTTGCCGATGTACCTGTTAATATATTCAACATGTTCCAGGGATTCTCGGTACTGAATGCA GAAGCAACGTCGCTGAATCTTCTTCATGATGACATGGACGTGCTGGGTTACAATGAGAAGGTGGGAGATGTATCTGAAGATGGTCGTGTTTCCATCTCTC CGATGGAGATTCAAGCATACAAGTTAGAGTTGCGGCCCAACCAGTAG
AA sequence Show only first row Show all	>Lus10015337 pacid=23160904 polypeptide=Lus10015337 locus=Lus10015337.g ID=Lus10015337.BGIv1.0 annot-version=v1.0 MPLSSYIGSRRGGGSVGGSGSGWPQSILPTSTTSKSKLIPSRKPRKRGALINFLFTNFFTISLSISLLFLFFTVLHFGFPKPLFSSAFSSMPSPPVRQRK TTVRRNSIQNGMSNGTTVDLTTKDLYDKIKFLDKDGGPWKQGWRVSYRGNEWDDEKLKVIVMPHSHNDPGWKLTVDEYYEKQSRHILDTIVETLSKDVRR KFIWEEMSYLEKWWRDASEGKRASFTKLVKNGQLEIVGGGWVMNDELTVDEYYEKQSRHILDTIVETLSKDVRRKFIWEEMSYLEKWWRDASEGKRASFT KLVKNGQLEIVGGGWVMNDEANSHFFSIIEQITEGNIWLNDTIGIIPKNSWAIDPFGYSSTMAYLLRRMGFENMLIQRTHYELKKELALHRNLEFVWRQS WDAGETTDIFVHMMPFYSYDIPHTCGPEPAICCQFDFARVPGFFYELCPWHQNPEETTPENVHERAKLLLDQYKKKSVLYRTNTLLIPLGDDFRYVTVDE AEAQYRNYQMLFDHINSNPSLNAEAKFGTLDDYFQALHEESDRKNYSVPGEIGSSHIGGFPSLSGDFFTYADREQDYWSGYYVSRPFFKAVDRVLEQTLR ATEMMVALFVGHCQRLQCEKLVIGFSHKLTAARRNLALFQHHDGVTGTAKDHVVRDYGMRMHTSLEDLQIFMSKAIEVLLGMHLEKLDLNPAKFEAEQVR AKYNVQPVHKALSPSEGTAQSVVLFNPTEQVREEVVMVVVNRPDVTVLDSNWTCVQSQVSPELQHDGNNIFSGRHRVHWKASVPAMGLETYYVANGYVGC EKAKPAKLKYVSPNSFSCPTSYACSKAAGDWAEIQNGQQTLTFNINHGLLQNVKHKNGSSYVMAEEIGMYSSDGSGAYLFKPIGDAKSIIQNDGITVITE GPLMQEVFSYPNTAFRRNPVSHSTRIYNGGNTVQEFVVETEYHVELLGDEFNDRELIVRYKTDIDNKGVFYSDLNGFQMSRRETYDKIPLQGNYYPMPSL AFIQGSNGDRFSVNSRQSLGVASLKDGWLEIMVDRRLLRDDGRGLGQGVTDNRPMNVVFHLLFETNISSTSNPVSNPVPLSPSLLSHRIGAHLNYPLFAF ISKDHEELSLQTYGRSFSPLAASLPCDLHIVNFKVARPALFSRELVGDPRFVRDPRFILIFQRRQWDASYCRTGRSQCTRFADVPVNIFNMFQGFSVLNA EATSLNLLHDDMDVLGYNEKVGDVSEDGRVSISPMEIQAYKLELRPNQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10015337 [exp]	0	1
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Lus10024393 [exp]	2.4	0.9013
AT2G21390			Coatomer, alpha subunit (.1)		Lus10025780 [exp]	3.0	0.9234
AT3G19870			unknown protein		Lus10030556 [exp]	3.5	0.9116
AT5G13390		NEF1	no exine formation 1 (.1)		Lus10002569 [exp]	3.9	0.9018
AT1G48110		ECT7	evolutionarily conserved C-ter...		Lus10018343 [exp]	4.5	0.8835
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10021442 [exp]	4.6	0.8951
AT1G79090			unknown protein		Lus10031788 [exp]	5.2	0.8888
AT1G01220		AtFKGP	Arabidopsis thaliana L-fucokin...		Lus10030230 [exp]	6.5	0.8680
AT3G60860			SEC7-like guanine nucleotide e...		Lus10009300 [exp]	6.9	0.9131
AT5G13390		NEF1	no exine formation 1 (.1)		Lus10001797 [exp]	10.2	0.8913

Compare expression of checked genes

Lus10015337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.