Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24020 41 / 5e-05 MLP423 MLP-like protein 423 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039454 [exp] 303 / 1e-107 AT1G24020 43 / 1e-05 MLP-like protein 423 (.1.2) Lus10014508 [exp] 236 / 7e-81 ND / Lus10032178 [exp] 233 / 7e-80 ND / Lus10005608 [exp] 184 / 3e-60 ND / Lus10016840 [exp] 86 / 9e-22 AT1G24020 58 / 5e-11 MLP-like protein 423 (.1.2) Lus10037715 [exp] 84 / 7e-21 AT1G24020 54 / 2e-09 MLP-like protein 423 (.1.2) Lus10016839 [exp] 77 / 2e-18 ND / Lus10003187 [exp] 71 / 9e-16 AT5G45860 46 / 1e-06 regulatory components of ABA receptor 5, PYR1-like 11 (.1) Lus10037393 [exp] 52 / 9e-09 AT2G26040 39 / 5e-04 regulatory components of ABA receptor 14, PYR1-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G212100 [exp] 110 / 3e-31 AT1G24020 50 / 6e-08 MLP-like protein 423 (.1.2) Potri.010G000400 [exp] 105 / 3e-29 AT1G24020 66 / 4e-14 MLP-like protein 423 (.1.2) Potri.010G000200 [exp] 103 / 7e-29 AT1G24020 65 / 1e-13 MLP-like protein 423 (.1.2) Potri.004G021100 [exp] 99 / 8e-27 AT1G24020 53 / 4e-09 MLP-like protein 423 (.1.2) Potri.010G000600 [exp] 96 / 2e-25 AT1G24020 67 / 1e-14 MLP-like protein 423 (.1.2) Potri.008G212700 [exp] 93 / 2e-24 AT1G24020 68 / 8e-15 MLP-like protein 423 (.1.2) Potri.008G213446 [exp] 93 / 2e-24 AT1G24020 68 / 8e-15 MLP-like protein 423 (.1.2) Potri.008G213669 [exp] 93 / 2e-24 AT1G24020 68 / 8e-15 MLP-like protein 423 (.1.2) Potri.008G213100 [exp] 87 / 7e-22 AT1G24020 52 / 1e-08 MLP-like protein 423 (.1.2) Potri.008G212300 [exp] 83 / 9e-21 AT1G24020 47 / 5e-07 MLP-like protein 423 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10015339 pacid=23160862 polypeptide=Lus10015339 locus=Lus10015339.g ID=Lus10015339.BGIv1.0 annot-version=v1.0 ATGGGAGTGACAAGCGCAACCCACGAGTTCACGTCATCAATCCCAGCAGGAAGGATGTACAAAGCTATTGTCGAGGAATCGCCAACCATCTTCCCCAACT TCATCCCTAACTACAAGAGTGAGGTTGTTCAAGGCGATGGCGGTGCTGGAAGCATCCTCCAGACTACCTTCCCTGACGAAGGGAACCAAGTGAAGACTGT GAAGCACAGAGTGGAAGCCAAGGATTCGACCAACTACCACAGCAAGTATACACTGATTGAAGGTGGCGCGTTGAGCGACAACGTAGAATCGGTGGTGAAC GAGGTCAAGATTGAGGCTGCAGGAGAGGGATGTGTGGTGAAAGCAATCAACCATTACCATACAAAGGGAGAAGCTGATAAGGCATTGATCGATACAGTTG GACAGCAGACGTTGGGTGTCTACAAGCTTTTGCAAGACTATCTTTTGGCCAACCCATCCGCCTGCGCCTGA
AA sequence Show only first row Show all	>Lus10015339 pacid=23160862 polypeptide=Lus10015339 locus=Lus10015339.g ID=Lus10015339.BGIv1.0 annot-version=v1.0 MGVTSATHEFTSSIPAGRMYKAIVEESPTIFPNFIPNYKSEVVQGDGGAGSILQTTFPDEGNQVKTVKHRVEAKDSTNYHSKYTLIEGGALSDNVESVVN EVKIEAAGEGCVVKAINHYHTKGEADKALIDTVGQQTLGVYKLLQDYLLANPSACA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10015339 [exp]	0	1
AT5G45860		RCAR5, PYL11	regulatory components of ABA r...		Lus10003187 [exp]	1.0	0.9898
AT1G13340			Regulator of Vps4 activity in ...		Lus10033552 [exp]	3.9	0.9847
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10031100 [exp]	4.2	0.9870
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10009988 [exp]	4.5	0.9829
AT5G01750			Protein of unknown function (D...		Lus10025253 [exp]	4.6	0.9816
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Lus10042118 [exp]	5.0	0.9822
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10005399 [exp]	6.5	0.9789
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10014284 [exp]	12.6	0.9727
AT1G17860			Kunitz family trypsin and prot...		Lus10007902 [exp]	14.8	0.9796
AT4G19880			Glutathione S-transferase fami...		Lus10014304 [exp]	15.5	0.9803

Compare expression of checked genes

Lus10015339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.