Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47990 576 / 0 SWA1, EDA13, EDA19 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) AT4G29830 83 / 3e-17 VIP3 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 82 / 5e-17 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G13480 74 / 8e-14 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G49040 74 / 2e-13 SCD1 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) AT5G50230 72 / 3e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 68 / 6e-12 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT1G18080 67 / 9e-12 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT3G15980 68 / 1e-11 Coatomer, beta' subunit (.1.2.3.4.5) AT1G48630 66 / 1e-11 RACK1B_AT receptor for activated C kinase 1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017890 [exp] 999 / 0 AT2G47990 584 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Lus10035065 [exp] 800 / 0 AT2G47990 528 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Lus10008305 [exp] 518 / 0 AT2G47990 358 / 1e-121 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Lus10021571 [exp] 84 / 1e-17 AT4G29830 543 / 0.0 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10017159 [exp] 84 / 2e-17 AT4G29830 545 / 0.0 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 78 / 5e-15 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10014674 [exp] 75 / 2e-14 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 74 / 3e-14 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 74 / 3e-14 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135600 [exp] 721 / 0 AT2G47990 614 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Potri.002G213500 [exp] 713 / 0 AT2G47990 587 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 82 / 5e-17 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G145800 [exp] 77 / 2e-15 AT4G29830 486 / 2e-174 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 77 / 2e-15 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 71 / 3e-13 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G049500 [exp] 73 / 4e-13 AT1G49040 1810 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.001G026800 [exp] 72 / 6e-13 AT5G13480 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.T125206 [exp] 71 / 9e-13 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G250200 [exp] 70 / 1e-12 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF09384 [flax] [poplar] UTP15_C UTP15 C terminal
Representative CDS sequence Show only first row Show all	>Lus10015340 pacid=23160934 polypeptide=Lus10015340 locus=Lus10015340.g ID=Lus10015340.BGIv1.0 annot-version=v1.0 ATGGCGGATCCGCAACAAACTACCTCTGTCTCCAAAACCTATAAGGTGAAGCCAAAGCTTCAATCCAAACCAAGAAACCCATCTAAAACCCTCGAATCGA AGTACTGGTCTTCTTTCAAAACAACAAAGATCGAGAATCTCCTCTCTTCAATACCTTCAATCGAGTTTTCCCCCAATTACCCCAACCGTAGCTCCTTCGC CGCCGCCAATCTCACATCTGTAACTTTCTTCTCCGGCCAAGACTTCTCCAAACTCTCCAACATTTCCGTCGCCCGCGACACCGTCACTTCCTGCTCGTTC CGCTCCGACGGCGCTCTCATAGCTGCCGCCGACCTCACAGGCGAAATAAAGGTGTTCAACACCAAGACCAGGGCCCCACTACGTCGTCTCCGCTCCCACA ATCGACCGGTCCGGTTTGTGAAATATCCATCTCTGGACAAGCTACACTTGGTCTCCGGCGGCGACGATGCCATTGTCAAGTACTGGGACGTCAGCACTGA GAACGTGGTCAGCAACTTGGAGGGACACAAGGATTACGTGAGGTGCGGCGACTGTTCTCCCATTGATGGCGGAAGCTTTTTGACCGGTTCTTATGATCAC ACCGTCAAACTGTGGGACGTGAAGGACGGGAGCAACGGGAAGGCAGTGGTGGTAGTGAATCACGGTAAGCCAGTGGAGGACGTGATGTTCTTGCCGTCGG GACTAATGTTTGCTACCGCAGGAGGCAACAGCGTGAAGATATGGGACGTGACAGGCGGAGGGAGGATGGTGCATTCGATGGAGAGCCATAACAAGACTGT AACTTCAATTTGCTTGGGAATGATTGGAGGAGAATACAGAATACTCAGCGTAGGTTTAGATGGGTACATGAAGGTGTTCGATTATGCTAAAATGAAGGTA ACTCATTCAATGAGGTACCCTGCTCCGCTAATGTCGATAGCAGTGTCACCCGATGGGAAAAGGAGGGCGATTGGGACTTCGAATGGGATGATATTTGCAG GGAAGAGGAAGGTTAAGAAGGATGAGGATGGGGTGGAAGAGGGTTCAGAATATGGAATCTTGAAAGGATTGGGAAGTGGAGGAGAGACGAGGAGAGTGTT AAGTCCGACGAATTTCAGGTACTTCCAGAGAAGCCAAGGAGAGAAGGCTAATGACGGGGACTATTTGGTGAGCAGGAAGAAGAAGGTGAAGTTGGCAGAG CATGATAAGCTGCTTAACAAGTTCAGACACAAAGAGGCGCTTGCATCTGTGCTTGGGAGTAAAGATCCAGAGAATGTGGTTGCAGTTATGGAGGAATTGG TGGCAAGAAGAAAGCTCATCAAGTGTGTGATGAATCTAGAGGAAGAAGAGCTTGGGTTGCTGCTCAGTTTCCTACACAGGTATGCAACCATGCCGCGGCA TTCACGGCTGCTGATGGGATTGACAAGGAAGGTTCTGGAGTTGAGGGCTGAAGATATCAAAGCTTCGGATGGGTTGAAGCTTTCTATTAGGAACATTAAG AGCTCGCTCGATGCCGAGATCAGGATACAGCAGTGGTTGCAAGAGATGCAGGGTGTCATTTCTCCTCTCTTGAGAATTGCTGGCAGAAAATAG
AA sequence Show only first row Show all	>Lus10015340 pacid=23160934 polypeptide=Lus10015340 locus=Lus10015340.g ID=Lus10015340.BGIv1.0 annot-version=v1.0 MADPQQTTSVSKTYKVKPKLQSKPRNPSKTLESKYWSSFKTTKIENLLSSIPSIEFSPNYPNRSSFAAANLTSVTFFSGQDFSKLSNISVARDTVTSCSF RSDGALIAAADLTGEIKVFNTKTRAPLRRLRSHNRPVRFVKYPSLDKLHLVSGGDDAIVKYWDVSTENVVSNLEGHKDYVRCGDCSPIDGGSFLTGSYDH TVKLWDVKDGSNGKAVVVVNHGKPVEDVMFLPSGLMFATAGGNSVKIWDVTGGGRMVHSMESHNKTVTSICLGMIGGEYRILSVGLDGYMKVFDYAKMKV THSMRYPAPLMSIAVSPDGKRRAIGTSNGMIFAGKRKVKKDEDGVEEGSEYGILKGLGSGGETRRVLSPTNFRYFQRSQGEKANDGDYLVSRKKKVKLAE HDKLLNKFRHKEALASVLGSKDPENVVAVMEELVARRKLIKCVMNLEEEELGLLLSFLHRYATMPRHSRLLMGLTRKVLELRAEDIKASDGLKLSIRNIK SSLDAEIRIQQWLQEMQGVISPLLRIAGRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10015340 [exp]	0	1
AT1G23290		RPL27A, RPL27AB	RIBOSOMAL PROTEIN L27A, Riboso...		Lus10004617 [exp]	4.6	0.9369
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10030482 [exp]	4.9	0.9340
AT1G20300			Pentatricopeptide repeat (PPR)...		Lus10011459 [exp]	5.5	0.9243
AT3G49240		EMB1796	embryo defective 1796, Pentatr...		Lus10018109 [exp]	5.7	0.9193
AT5G14050			Transducin/WD40 repeat-like su...		Lus10036236 [exp]	6.6	0.9232
AT5G60670			Ribosomal protein L11 family p...		Lus10041308 [exp]	8.9	0.9326
AT3G55340		PHIP1	phragmoplastin interacting pro...		Lus10030327 [exp]	11.5	0.9182
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Lus10020055 [exp]	12.7	0.9333
AT3G18790			unknown protein		Lus10023225 [exp]	13.3	0.8974
AT3G49910			Translation protein SH3-like f...		Lus10018139 [exp]	16.0	0.9309

Compare expression of checked genes

Lus10015340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.