Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47980 1291 / 0 SCC3, ATSCC3 sister-chromatid cohesion protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008306 [exp] 1913 / 0 AT2G47980 1261 / 0.0 sister-chromatid cohesion protein 3 (.1) Lus10023798 [exp] 469 / 2e-147 AT2G47980 371 / 3e-111 sister-chromatid cohesion protein 3 (.1) Lus10034339 [exp] 246 / 5e-67 AT1G25350 1290 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Lus10041432 [exp] 45 / 2e-05 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G230800 [exp] 1472 / 0 AT2G47980 1292 / 0.0 sister-chromatid cohesion protein 3 (.1) Potri.014G151400 [exp] 1154 / 0 AT2G47980 957 / 0.0 sister-chromatid cohesion protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08514 [flax] [poplar] STAG STAG domain
Representative CDS sequence Show only first row Show all	>Lus10015341 pacid=23160915 polypeptide=Lus10015341 locus=Lus10015341.g ID=Lus10015341.BGIv1.0 annot-version=v1.0 ATGGAGGACGCAGCTGAAGGCAGGGGAACTCGTCGCTCTAAGCGGAATCATACCGCGACTGCTAGGAGAGCAACTGGTAGCCGAGGCGAATATCATGAAA CATCTGTTGGTGCTTCTGACGATGGACCTTCCCATGATGAACTTGAGGATGATTTCGAAGAACTTCGTCCTCAACCTAAGCGGAATCGTACTACCGAGGG AAGTTCAGCTGCTCATCTCGAGTCGAATACCTTGACTGAGGCCGTCAAGGGTGATGGAAGAAGAATTCCTCAAGTGGCAAAGTCTTGGGTGGAACGTTAC GAGAAGGATCCAAAACTTGCGATGGCTGAACTATTGAATCTGCTGTTTGAGGCATGTGGAGCTAAGTATCAAATTGAAACGGAGTTGGTAGAGGAGACTG ATGTTGATGAAGTTGTAGTTGCACTGGTTAATCTTGCCAGACAGGATAAAACTGAAGATCACCAAAGTTTGAAGCGGAAGGATTTTAGGAACTTCAGAGA TAACCTTGTGTTTTTCTGGGACAATCTGGTCGTTGAGAGCCAAAATGGCCCATTGTTTGACAAAGTATTGTTTGACAAGTGCATGGATTATATTATTGCT CTATCATGCACACCTCCAAGGGTTTTCCGTCAAGTAGCTTCCTTGATGGGTCTTCAACTTGTTACATCCTTCATTACTGTTGCCAAGGTGCTCGGTTCGC AAAGAGAAACTACTCAGAGGCAGTTAAACGCTGAAATGAAAAAACGCACCGATGGTCCTCGTGTGGATTCACTAAATAAAAGGTTGTCAACAACTCATGA TAACATTGTCATGCTAGAGGAAATGATGCGCAAAATATTTACCGGTTTATTTGTCCATCGATATCGAGATATTGACCCCAATATCCGAATGTCTTGCATC GAGTCTCTCGGTGTGTGGAGTTTATCTTATCCATCACATTTTCTGCGAGATTCGTACTTAAAGTACCTCGGATGGACGCTGAATGACAAAAACGCTGGTG TGAGAAAGACATCAATCCTTGCATTGCAAAATCTCTATGATGTGGATGATAATGTGCCGACCCTTAGTCTCTTTTCTGAAAGATTTTCCAACCGGATGAT TGAGCTTGCTGATGACGTAGATGTTTCTGTGGCTGTTTGTGCGATTGGACTTGTGAAGCAATTACTTAGGCATCAGCTTCTCCCTGAAGATGACTTGGGT CCACTGTATGATTTACTGATTGATGATCCACCAGAGATTAGACATGCGATTGGAGAATTAGTATATGATCACTTGATAGCTCAAAAATTTAATAGCCAAT CTGGCATAAGAGGTAGTGACAAGGCCTCTTCTGAGGTACACCTCAGTCGACTGCTGCAAATTTTGAGGGAGTTTTCAACAGACCCAATACTCTGTTTCTA TGTTATCGATGATGTGTGGGAGTACATGAAAGCAATGAAGGACTGGAAGTGTATTATATCCATGCTCCTGGATGAGAATCCCAGGACAGAGCTTACTGAT GATGATGCAACAAACTTGGTCAGACTTCTTTTTGCTTCTACCAGAAAAGCTGTTGGAGAGAGAATCGTTCCGTCATCAGACAACCGAAAACAATATTACA ACAAAGCACAAAGAGAACAATTTGAAACTAGCAAGCGGGACATAACAGTAGCAATGATGAAAAATTACCCACTTCTGCTACGGAAATACGTGGCTGAGAA ATCAAAGATACCGTCACTTGTCGAGACAATTTTGTATATGGACTTGGAGCTTTATTCACTCAAGAGACAGGACGAGAACTTCAGAAGTGTTCTGCTACTC ATCAAAGAGGCATTTTTTAAACATGGGGAGAAGGAGGCCTTGAGATCTTGTGTGAAAGCACTTAATTTTTGCTCAATGGAGAGCAAAGGAGAGCTGAAAG ATTTTTCCTGTAATCAGCTGAAGTATCTCGAGGATGAGCTTATTGCTAAGCTTCAATCTGCTCTGAAAGAAGCTGCTGACGGAGATGAATATTCTCTTCT TGTCAATTTGAAAAGGTTATATGAGCTTCAATTGTCGAAGGCTGTACCACTTGAGAGTTTATTTGAAGATTTTGTTAATGTTCTTCATGATTTCAGAACT GGAAATGATGAGGTTGCGAGTTTTCTGCTCCTCAACATGTATTTGCATGTGGCTTGGTCTTTAGACGCTGTTGTTAATAGTGAAACCATCCTTGAAGAAG CTTTAACTTCCTTGCTGGTGAAACGAGATACTTTGTTTAAGGAACTCCAATACTTTGTTGGTAGCCAGTCTGATGAGGGGCATACCTACGAAGATCAGTT AGCTTGCAGGGTTTGTATTATAATCGCAGAGGCATGGTGTCTATTTCGACAGAGCAATTTTTCATCAAGCCAGCTGGAAAGTTTGGGCTATAGCCCTGAC TCATCTTTTCTTTATGGGTTTTGGAAACTTTGCGAGAAGCAGCTAAAAGTTACAGACGTGACAGAAGATGCACGTGTGAACAACGAGTACATTGAAGAGA CAAATAGAGATGCTATTATGATTGCTGCTGCCAAGTTGGCTACCACTGATGCAGTTTCGAAAGAATATCTTTGTCCACAAATCATATCTCACTTTGTAAT GCATGGTACGGGCATCACAGATGTCATTAAACACTTTATCACTGCTATAAAGAAAAGAGGAGATGATTATCCCATTATCTTCCTAGAAGCTTTGAAGACG GCATATGGACGGCATATGTTAGAAGTTGACGGAACTGAAGATGAATCAGTGACAAGCAAGACTTTTCAAGATTGCAAGGATCTGGCTGCCCGAATTTCTG GGTCATTTGTCGGTGCTGCTCGAAACAAGCATCGGTTGGATATTCTTAAAATGGTGAAGGGTGGTATTGAGTATGCTTTCTTAGATGCTCCGAAACAGTT ATCATTTCTGGAAGGTGTGGTGCTTCATTTCGTTCCCAGACTTCCTGTGTCTGACATCTTGGAAATTCTCAAGGATGTGGAACGCAGAACTGAGAATGTG AACGCTGATGAAGATCCAAGTGGTTGGCGCCCCTATAAAACTTTTGTGAACAGCTTGCAAGAGAAGTATGCTAAGAATGAAGGCTTCCCAGTCCCAGAAG AGAGGGAGGGTAATACAACTAAGCGAAGAGCTCGTCCAAGGAAGCGGAGCAACATCAACGGGAAGAAACTGTTTGATGACCATAGTTCAAGTGAAGCCGA TTCCATCAGTGCATCGGATGAAGAAGAGGGACAGGGTCGAGATGAAGATGAAGATGTTCCGCTAAGCGCATTGAGAAATAGAGTTTCAGCTTCTAGAGCA TCAGATTGGCGCTGCCTCACTGTCATTCCGGCTTGCAGCTAA
AA sequence Show only first row Show all	>Lus10015341 pacid=23160915 polypeptide=Lus10015341 locus=Lus10015341.g ID=Lus10015341.BGIv1.0 annot-version=v1.0 MEDAAEGRGTRRSKRNHTATARRATGSRGEYHETSVGASDDGPSHDELEDDFEELRPQPKRNRTTEGSSAAHLESNTLTEAVKGDGRRIPQVAKSWVERY EKDPKLAMAELLNLLFEACGAKYQIETELVEETDVDEVVVALVNLARQDKTEDHQSLKRKDFRNFRDNLVFFWDNLVVESQNGPLFDKVLFDKCMDYIIA LSCTPPRVFRQVASLMGLQLVTSFITVAKVLGSQRETTQRQLNAEMKKRTDGPRVDSLNKRLSTTHDNIVMLEEMMRKIFTGLFVHRYRDIDPNIRMSCI ESLGVWSLSYPSHFLRDSYLKYLGWTLNDKNAGVRKTSILALQNLYDVDDNVPTLSLFSERFSNRMIELADDVDVSVAVCAIGLVKQLLRHQLLPEDDLG PLYDLLIDDPPEIRHAIGELVYDHLIAQKFNSQSGIRGSDKASSEVHLSRLLQILREFSTDPILCFYVIDDVWEYMKAMKDWKCIISMLLDENPRTELTD DDATNLVRLLFASTRKAVGERIVPSSDNRKQYYNKAQREQFETSKRDITVAMMKNYPLLLRKYVAEKSKIPSLVETILYMDLELYSLKRQDENFRSVLLL IKEAFFKHGEKEALRSCVKALNFCSMESKGELKDFSCNQLKYLEDELIAKLQSALKEAADGDEYSLLVNLKRLYELQLSKAVPLESLFEDFVNVLHDFRT GNDEVASFLLLNMYLHVAWSLDAVVNSETILEEALTSLLVKRDTLFKELQYFVGSQSDEGHTYEDQLACRVCIIIAEAWCLFRQSNFSSSQLESLGYSPD SSFLYGFWKLCEKQLKVTDVTEDARVNNEYIEETNRDAIMIAAAKLATTDAVSKEYLCPQIISHFVMHGTGITDVIKHFITAIKKRGDDYPIIFLEALKT AYGRHMLEVDGTEDESVTSKTFQDCKDLAARISGSFVGAARNKHRLDILKMVKGGIEYAFLDAPKQLSFLEGVVLHFVPRLPVSDILEILKDVERRTENV NADEDPSGWRPYKTFVNSLQEKYAKNEGFPVPEEREGNTTKRRARPRKRSNINGKKLFDDHSSSEADSISASDEEEGQGRDEDEDVPLSALRNRVSASRA SDWRCLTVIPACS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10015341 [exp]	0	1
AT1G30470			SIT4 phosphatase-associated fa...		Lus10023354 [exp]	2.0	0.9119
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10019868 [exp]	3.3	0.9129
AT5G19420			Regulator of chromosome conden...		Lus10009701 [exp]	3.7	0.8817
AT3G14750			unknown protein		Lus10038143 [exp]	4.7	0.8896
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10023583 [exp]	6.5	0.9099
AT1G11060			WAPL (Wings apart-like protein...		Lus10018478 [exp]	6.7	0.8812
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10036010 [exp]	6.9	0.9078
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10027630 [exp]	7.5	0.8930
AT2G20790			clathrin adaptor complexes med...		Lus10034013 [exp]	7.7	0.8923
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10010121 [exp]	8.7	0.8761

Compare expression of checked genes

Lus10015341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.