Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64150 393 / 2e-136 RNA methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008072 [exp] 47 / 8e-06 AT3G13440 310 / 1e-107 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G221400 [exp] 493 / 1e-175 AT5G64150 413 / 2e-144 RNA methyltransferase family protein (.1) Potri.018G000850 [exp] 289 / 1e-96 AT5G64150 266 / 2e-87 RNA methyltransferase family protein (.1) Potri.001G003632 [exp] 202 / 2e-64 AT5G64150 170 / 2e-52 RNA methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05175 [flax] [poplar] MTS Methyltransferase small domain
Representative CDS sequence Show only first row Show all	>Lus10015342 pacid=23160874 polypeptide=Lus10015342 locus=Lus10015342.g ID=Lus10015342.BGIv1.0 annot-version=v1.0 ATGCACCTAAGCTTCACCCGTGCGTGTTTCCACTCGCGACCCTTTTGCTCTGCTTCACTGAAACCATCCGGAGCAGTCACGAAACCCGCAATCCCTCTAT TTGAAAGGCCACCTATTCACTCGGCAACTTCACTCCAGCTTCAGAAATGGCATGGATGGGCTACAACTCTCGCATCCTCTGTTGGATCCTCCTTTGTAGA AGCTGATAATGGCCCTGATTCGACCCTCTTGTGCAGGGAGCTTAATTGGCTTTTGGAAGACGCTCTCGACAATCCTTCCTCGTTTAAATATGCAAGTAAG CAAGGTGTTTGCGAAAATGTCAAGCTGAGGGCCAGCTTGGATGATCTTTACAACTTATGGAAGGAAAGGATTGAAAATAGAAGACCCCTTCAGTATCTTG TTGGGTGTGAGCATTGGAGAGATTTGGTGCTGAGTGTTCAAGAAGGGGTTTTGATTCCAAGGCCCGAGACTGAGTTGATTGTTGACTTGGTGGATGAGGC TGTTTCTACTTCTGATGAATTACGAAATGGATTGTGGGCAGATTTGGGGACAGGTAGTGGCGCTCTTGCCATTGGTGTTGCTAGGGTTTTAGGGAATTCT GGGAGGGTTATTGCCACGGATGTAAGTCCTCTTGCTGTTTCCGTATCTAGCTTTAACGTGCAGAGGTATGGCCTCCAGGATCTGATTGAGGTGAGACATG GTTCTTGGTTTGAGCCACTGAAGAATGCAGAAAGAAAACTTTCAGGTATTGTCAGTAACCCACCATACATTCCAAGCAACAATATGCCGCAACTTCAAGC TGAAGTTGGCAGACATGAACCCTCGGTGGCATTAGATGGTGGTGATACTGGCATGGATTCTCTTCTCCAGCTTTGCACTGGAGCAACTACGATGCTGAAA CCTGGTGGATTTTTCGCCTTGGAGGCAAGTTATTTGCAATCCCTAAAAGTTGTCCTTGAGCAAATAGCAACAAATGGCAAAGAGCAGTGCAAGTATCTTG TAGATTATATTCAAAGAGAAGGTGCTGGGAACTTTTGCAATCTGAACATAGTGCCTGATTTCGCTGGAATTGAAAGATTTGTTACTGGGTTCCACAAGTA A
AA sequence Show only first row Show all	>Lus10015342 pacid=23160874 polypeptide=Lus10015342 locus=Lus10015342.g ID=Lus10015342.BGIv1.0 annot-version=v1.0 MHLSFTRACFHSRPFCSASLKPSGAVTKPAIPLFERPPIHSATSLQLQKWHGWATTLASSVGSSFVEADNGPDSTLLCRELNWLLEDALDNPSSFKYASK QGVCENVKLRASLDDLYNLWKERIENRRPLQYLVGCEHWRDLVLSVQEGVLIPRPETELIVDLVDEAVSTSDELRNGLWADLGTGSGALAIGVARVLGNS GRVIATDVSPLAVSVSSFNVQRYGLQDLIEVRHGSWFEPLKNAERKLSGIVSNPPYIPSNNMPQLQAEVGRHEPSVALDGGDTGMDSLLQLCTGATTMLK PGGFFALEASYLQSLKVVLEQIATNGKEQCKYLVDYIQREGAGNFCNLNIVPDFAGIERFVTGFHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64150			RNA methyltransferase family p...		Lus10015342 [exp]	0	1
AT3G54980			Pentatricopeptide repeat (PPR)...		Lus10019524 [exp]	2.0	0.9199
AT5G46390			Peptidase S41 family protein (...		Lus10004545 [exp]	4.8	0.8486
AT3G21480			BRCT domain-containing DNA rep...		Lus10038633 [exp]	4.9	0.8901
AT4G12010			Disease resistance protein (TI...		Lus10019654 [exp]	5.1	0.8922
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10038081 [exp]	5.3	0.8873
AT1G60220		ULP1D, OTS1	OVERLY TOLERANT TO SALT 1, UB-...		Lus10030622 [exp]	5.9	0.8851
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10037903 [exp]	8.8	0.8747
AT2G24640		UBP19	ubiquitin-specific protease 19...		Lus10026918 [exp]	10.1	0.8823
AT1G11660			heat shock protein 70 (Hsp 70)...		Lus10040078 [exp]	11.5	0.8551
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Lus10024888 [exp]	12.7	0.8468

Compare expression of checked genes

Lus10015342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.