Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01310 1672 / 0 Phosphoglycerate mutase-like family protein (.1.2) AT5G15070 1659 / 0 Phosphoglycerate mutase-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008307 [exp] 1902 / 0 AT5G15070 1662 / 0.0 Phosphoglycerate mutase-like family protein (.1.2) Lus10032191 [exp] 1462 / 0 AT5G15070 1465 / 0.0 Phosphoglycerate mutase-like family protein (.1.2) Lus10005263 [exp] 1343 / 0 AT5G15070 1377 / 0.0 Phosphoglycerate mutase-like family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G129900 [exp] 1797 / 0 AT5G15070 1761 / 0.0 Phosphoglycerate mutase-like family protein (.1.2) Potri.017G076400 [exp] 1761 / 0 AT5G15070 1745 / 0.0 Phosphoglycerate mutase-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00328 [flax] [poplar] His_Phos_2 Histidine phosphatase superfamily (branch 2)
Representative CDS sequence Show only first row Show all	>Lus10015343 pacid=23160923 polypeptide=Lus10015343 locus=Lus10015343.g ID=Lus10015343.BGIv1.0 annot-version=v1.0 ATGAATGATACTGGAGTTGTAGAGAAGATGGACAAGATAAAGGTTGGAGTCTGCGTCATGGAAAAGAAGGTGAAATGCGGATTCGAGGTGTCTTCTGCTC CCATGGGACAAATTCTCGAGAGGTTACAGGCATTTGGCGAATTTGAGGTTATACATTTTGGAGACAAGGTTATTCTTGAAGATCCAATCGAGAGGTGGCC AATATGTGACTGTTTGATTGCCTTTTATTCCAGTGGTTATCCCCTTGAAAAGGCAGAGGCATATGCGGCTTTAAGAAAGCCTTTCCTAATCAATGAATTG GAGCCTCAACACTTGCTTCATGATCGAAGGAAGGTATATGAGCGTCTTGAAAGGTTTGGAATTCCTGTTCCAAGGTATGCCCTTGTGAATCGACAATTTC CTTATCAAGAGCTTGAATATTTTGTTGAGGAAGAAGATTTCATTGAGGTTCATGGTCAACGATTTTGGAAGCCTTTCGTAGAGAAGCCAGTTCATGGGGA CGACCATAGTATCATGATATATTATCCCAGTTCTGCGGGCGGAGGCATGAAGGAACTATTCAGGAAGGTTGGAAATCGTTCCAGTGAGTTCAACCCAGAT GTAAGAAGAGTTAGGCGTGAAGGATCTTACATATATGAAGAATTCATGCCAACTGGTGGAACCGATGTCAAGGTATATACAGTTGGTCCGGAATATGCGC ATGCTGAGGCAAGGAAGTCTCCAGTAGTCGACGGTGTCGTAATGAGAAATCCTGACGGCAAGGAGGTGAGGTATCCAGTGTTATTGACACCTAATGAGAA GCAAGTGGCGCGAGAAGTTTGCCTTGCTTTTAGGCAAGGGGTATGTGGATTTGATCTTCTGCGTTGTGAAGGACGTTCATATGTTTGTGATGTGAATGGT TGGAGTTTTGTGAAGAATTCTTACAAATACTATGATGATGCTGCTTGTGTTTTGAGGAAGATGTTTCTAGATGCAAAAGCTCCTCATTTATCAACTGCAA TTCCACCTACATTACCATGGAAAGTAAATGAACCCGCTCAACCTACTGAAGGATTGACACGGCAAGGAAGTGGAATTATTGGCTCATTTGGGCAGTCTGA GGAGCTACGCTGTGTTATTACAATTATCCGACATGGTGACAGAACTCCCAAGCAGAAGGTGAAGTTGAAGGTTACTGAGGATAAGCTATTGAACTTGATG TTGAAGTACAATGGGGGAAGACCCAGGGCTGAGACAAAATTGAAAAGTGCTATTCAATTGCAAGACTTGTTGGATGCCACGCGAATGCTTGTTCCTCGTA GTAGACCAGGTCGAGAAAGTGACAGCGAGGCAGAAGACATTGAGCATGCTGAAAAACTACGCCAAGTTAAAGCAGTGCTCGAGGAGGGAGGACATTTCTC TGGGATTTACAGGAAAGTCCAGTTAAAGCCGTTAAAGTGGAATAAAGTCCAAAAAAGTAACGGCGAAGGAGAGGAGGAACGGCCTGTTGAAGCCTTGATG GTTCTCAAGTATGGAGGTGTGCTTACCCATGCTGGCAGAAAGCAGGCAGAAGAACTGGGTAGATATTTTCGGAATAATATGTATCCAGTATGTATTACTG AAAGGATAGAATTCAGTGGAGTAAATGATACTATTCTTTCTCATGATAAATGGGCGACTCTGCAGGGGAAGATGTCTGCTGCTGCATTTGCAAAAGGGCT TCTCGATTTGGAAGGCCAGCTGACTCCAATACTGGTTTCCCTGGTTAGCAAGGATTCTTCCATGTTGGATGGAGTTGATGCTGCTAGCATTGAGATGGAA GAAGCTAAGGCAAGGCTGAATGAGATAATCACTTCCAGTACGAAGATTGCTACTTGCAATGAATCATCTGAATGTCCGTGGATGACTGATGGGACTGGAC TTCCGCCACATGCCTCTGAACTTCTTCCTAAGCTGGTAAAATTGACCAAGAAGGTTACTGAGCAAGTCAGACTACTTGCAAAATATGAAGATGAAGACCT CACTGAGACAAGCACCTACGATGTAGTTCTCCCATATGATCAAGCGAAGGCCCTTGGTAAAACGAACATTGATGTAGACCGAATTGCTGCTGGGTTGCCC TGCGGCAGTGAAGGGTTCTTGTTGATGTATGCTCGTTGGAGGAAACTTGAAAGGGACTTGTATAATGAGCGTAAAGAGAGGTTCGACATTACTCAAATTC CTGATGTTTATGACTCCTGCAAATATGATCTCTTGCACAATGCTCATCTTAATCTAGAAGGACTTGACGAACTTTTTAAAGTCGCTCAGTTTCTTGCAGA TGGTGTGATTCCAAATGAGTATGGGATCAATCCAAAGCAGAAACTGAAGATCGGTTCAAAGATTGCACGGCGATTGCTGGGTAAGATCTTGATTGACCTG AGGAATACCCGCGAGGAAGCAATTAGTGTGGCTGAATTAAAGGGTAGTCAGGACCAAGAGTCTACTTCTACAAAGATTGAAAAGGAGAACTCTGATTATC AACCAAAGCCTTATATTAGAAGTGAAGAGAATAGGCGAACTAGCACAGCAAGTGAAATTTCAATCGAGCAGGACGACGATGATGAAAAAGAGACGAAATA CCGCTTGGATCCAAAGTATGCTAATGTTAAAACACCAGATCGCCATGTCAAGACGCGGCTGTACTTCACTTCAGAATCACATATACATTCACTTATGAAT GTTCTTCGTTACTGTAACCTTGACGAGTCTCTTCACGGTGAAGATAGTCTGGTCTGCGATAATGCATTGGAGAGATTGCACAACACAAAAGAGCTGGACT ATATGAGCTATATCGTGTTGAGGATGTTTGAGAACACTGAGGTGGCATTAGAAGACCCGAAAAGGTTCCGCGTAGAAATGACATTTAGCCGAGGTGCAGA TTTATCACCACTGGAGGGAAACGACGTGGAGGCCACGTCTTTACACCGAGAGCATACGCTTCCTATAATGGGTCCAGAACGACTGCAAGAGGTAGGATCA TATCTGACATTTGAGAAGATGGAAATGATGATTCGGCAGTTTGCGATGCCGGCAGAAGATTTTCCACCAGCGGCAACACCGGCAGGTTTCTCAGGCTACT TCTCGAAAAGAGCAGCTGTGCTGGAGCGCCTGGGTTATCTTTTGCGCGTTTGA
AA sequence Show only first row Show all	>Lus10015343 pacid=23160923 polypeptide=Lus10015343 locus=Lus10015343.g ID=Lus10015343.BGIv1.0 annot-version=v1.0 MNDTGVVEKMDKIKVGVCVMEKKVKCGFEVSSAPMGQILERLQAFGEFEVIHFGDKVILEDPIERWPICDCLIAFYSSGYPLEKAEAYAALRKPFLINEL EPQHLLHDRRKVYERLERFGIPVPRYALVNRQFPYQELEYFVEEEDFIEVHGQRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFNPD VRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQVAREVCLAFRQGVCGFDLLRCEGRSYVCDVNG WSFVKNSYKYYDDAACVLRKMFLDAKAPHLSTAIPPTLPWKVNEPAQPTEGLTRQGSGIIGSFGQSEELRCVITIIRHGDRTPKQKVKLKVTEDKLLNLM LKYNGGRPRAETKLKSAIQLQDLLDATRMLVPRSRPGRESDSEAEDIEHAEKLRQVKAVLEEGGHFSGIYRKVQLKPLKWNKVQKSNGEGEEERPVEALM VLKYGGVLTHAGRKQAEELGRYFRNNMYPVCITERIEFSGVNDTILSHDKWATLQGKMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGVDAASIEME EAKARLNEIITSSTKIATCNESSECPWMTDGTGLPPHASELLPKLVKLTKKVTEQVRLLAKYEDEDLTETSTYDVVLPYDQAKALGKTNIDVDRIAAGLP CGSEGFLLMYARWRKLERDLYNERKERFDITQIPDVYDSCKYDLLHNAHLNLEGLDELFKVAQFLADGVIPNEYGINPKQKLKIGSKIARRLLGKILIDL RNTREEAISVAELKGSQDQESTSTKIEKENSDYQPKPYIRSEENRRTSTASEISIEQDDDDEKETKYRLDPKYANVKTPDRHVKTRLYFTSESHIHSLMN VLRYCNLDESLHGEDSLVCDNALERLHNTKELDYMSYIVLRMFENTEVALEDPKRFRVEMTFSRGADLSPLEGNDVEATSLHREHTLPIMGPERLQEVGS YLTFEKMEMMIRQFAMPAEDFPPAATPAGFSGYFSKRAAVLERLGYLLRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01310			Phosphoglycerate mutase-like f...		Lus10015343 [exp]	0	1
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10021629 [exp]	3.9	0.8107
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10024729 [exp]	4.2	0.8459
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10022077 [exp]	6.7	0.8173
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10014930 [exp]	7.6	0.8252
					Lus10032008 [exp]	13.2	0.8045
AT1G15740			Leucine-rich repeat family pro...		Lus10025751 [exp]	13.6	0.8157
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Lus10013838 [exp]	14.4	0.7678
AT3G62010			unknown protein		Lus10038011 [exp]	15.5	0.7274
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10038819 [exp]	16.4	0.7950
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10015361 [exp]	17.3	0.6990

Compare expression of checked genes

Lus10015343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.