Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42440 377 / 7e-130 Protein kinase superfamily protein (.1) AT5G53890 246 / 2e-73 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT3G59110 230 / 9e-71 Protein kinase superfamily protein (.1) AT5G07280 239 / 3e-70 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G55610 237 / 1e-69 BRL1 BRI1 like (.1.2) AT1G72300 235 / 4e-69 Leucine-rich receptor-like protein kinase family protein (.1) AT2G01950 235 / 4e-69 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT3G13380 235 / 5e-69 BRL3 BRI1-like 3 (.1) AT2G02220 232 / 2e-68 ATPSKR1 phytosulfokin receptor 1 (.1) AT1G01540 223 / 3e-68 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014996 [exp] 249 / 1e-73 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10038875 [exp] 246 / 1e-72 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10001120 [exp] 217 / 2e-70 AT5G42440 112 / 7e-31 Protein kinase superfamily protein (.1) Lus10005403 [exp] 237 / 7e-70 AT5G53890 1248 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10016395 [exp] 236 / 3e-69 AT1G72300 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10009213 [exp] 234 / 9e-69 AT5G53890 1258 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10019722 [exp] 234 / 1e-68 AT1G72300 1189 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10006215 [exp] 221 / 4e-68 AT1G56720 599 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10007919 [exp] 222 / 7e-68 AT1G01540 751 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G195500 [exp] 465 / 2e-164 AT5G42440 388 / 2e-134 Protein kinase superfamily protein (.1) Potri.002G065400 [exp] 465 / 2e-164 AT5G42440 387 / 4e-134 Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 234 / 7e-74 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.001G161000 [exp] 241 / 2e-71 AT1G72300 1199 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.012G139000 [exp] 241 / 6e-71 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.015G141200 [exp] 241 / 7e-71 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G074000 [exp] 239 / 1e-70 AT1G72300 1215 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G169600 [exp] 236 / 3e-69 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.014G088800 [exp] 225 / 4e-69 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G040200 [exp] 221 / 1e-68 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10015344 pacid=23160852 polypeptide=Lus10015344 locus=Lus10015344.g ID=Lus10015344.BGIv1.0 annot-version=v1.0 ATGAATTCCATCTTCCTCTCTATTATCGCCGCTATTATCAGCTTCTTCTTAATCACCCTTATCTTCACTGTCGTCTGCCTCGTCTGCCAATCCATAAAAT CTTCCCATCGAACTCACCATGACCTCCATCGCACTCGAGCCGTCCGATCCGCACCCCCTGCTGCCTTCGAACTCTCCTCCGTCACCATCGACGAGAGTGC CTCCTTTGACCCCTCTCTCAACCGAGTCTCCATGGAGGAGCTCAAGCTCGCCACCAAGAATTTCTCCAGAGATCTAATCATCGGCGACGGCAGCTTCGGC CTCGTCTACAAGGCAAGCCTCTCCGACGGAGTCACTGTCGCCATCAAGAAACTCGACCCTGACGCCTTCCAAGGGTTCCGGGAATTCCGGGCGGAGATGG AGACTCTTGGGAAGCTCCGACACCGCAACATCGTCAAGATGCTCGGCTACTGCGCCTCCGGATCCGATCGGGTCCTCATTTACGAGTTCGTCGAGCGGGG AAGCCTCGACCAATGGCTGCACGACACGTCGGCGCTCGTCAAGACAGACCCGTCTGTTACGCTGCTGCCGTTATCTTGGGAGACGAGGAACAAGGTTGTG GGGGGTGTGGCTAATGGGCTCAGGTATTTGCATGGGCTGGACACTCCCATTATCCATAGGGACATCAAGGCCAGCAATGTACTGTTGGACTTTGATTTTG AGGCCCACATTGCGGATTTTGGGCTTGCGCGGACCGTTGATGCTTCGCATTCGCACGTTTCGACGCAAGTAGCCGGGACGATGGGGTACATGCCGCCGGA GTACAAAGACGGGGTAGTGGCGGCGACAGTGAAGGCGGATGTGTATAGTTTCGGGATATTGATGTTTGAGATAGCGACGGGAGAGAGGCCGAATTTGCCG ATGTTGTTCAAGGGAAAGGAGATGGAGAAGGGAAAGGAGATGGGGTTGATTGAATGGGCTCGGAGAATGATGGGGGAAAATTGTTACGAGGAAATGTTGG ACGCACGTATGGGGAAGGAAGGGGTGAGTGAAGAGACAGTGAAGGAATACTTCAGGATAGCTTCAATGTGCTGCAATGAAATAAATGGAGAAAGACCAGT GATGCCTCAAGTTGTGGATTTGTTGAATACACTTTCTGCTTACTAA
AA sequence Show only first row Show all	>Lus10015344 pacid=23160852 polypeptide=Lus10015344 locus=Lus10015344.g ID=Lus10015344.BGIv1.0 annot-version=v1.0 MNSIFLSIIAAIISFFLITLIFTVVCLVCQSIKSSHRTHHDLHRTRAVRSAPPAAFELSSVTIDESASFDPSLNRVSMEELKLATKNFSRDLIIGDGSFG LVYKASLSDGVTVAIKKLDPDAFQGFREFRAEMETLGKLRHRNIVKMLGYCASGSDRVLIYEFVERGSLDQWLHDTSALVKTDPSVTLLPLSWETRNKVV GGVANGLRYLHGLDTPIIHRDIKASNVLLDFDFEAHIADFGLARTVDASHSHVSTQVAGTMGYMPPEYKDGVVAATVKADVYSFGILMFEIATGERPNLP MLFKGKEMEKGKEMGLIEWARRMMGENCYEEMLDARMGKEGVSEETVKEYFRIASMCCNEINGERPVMPQVVDLLNTLSAY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42440			Protein kinase superfamily pro...		Lus10015344 [exp]	0	1
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10016283 [exp]	1.4	0.8718
AT5G42440			Protein kinase superfamily pro...		Lus10001120 [exp]	2.0	0.8491
AT3G48090		ATEDS1, EDS1	enhanced disease susceptibilit...		Lus10042937 [exp]	3.5	0.8355
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10012031 [exp]	3.9	0.8251
AT4G05400			copper ion binding (.1.2)		Lus10035454 [exp]	5.3	0.8022
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Lus10006493 [exp]	6.6	0.8337
AT5G43260			chaperone protein dnaJ-related...		Lus10015783 [exp]	7.1	0.7953
AT5G45840			Leucine-rich repeat protein ki...		Lus10007516 [exp]	8.9	0.7612
AT3G22380		TIC	time for coffee (.1.2)		Lus10002447 [exp]	8.9	0.7498
AT5G51190	AP2_ERF		Integrase-type DNA-binding sup...		Lus10032499 [exp]	9.5	0.8042

Compare expression of checked genes

Lus10015344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.