Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39940 522 / 0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001121 [exp] 738 / 0 AT5G39940 507 / 2e-177 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G130000 [exp] 586 / 0 AT5G39940 557 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03486 [flax] [poplar] HI0933_like HI0933-like protein
Representative CDS sequence Show only first row Show all	>Lus10015345 pacid=23160879 polypeptide=Lus10015345 locus=Lus10015345.g ID=Lus10015345.BGIv1.0 annot-version=v1.0 ATGAGCTTGAAATCAAGTTTAGCTACCTTCTTTCTCCAATTTGGAATTCTTCCTCCTTGTGCTTCTTACTCTACTACCTCCTCCCGGGCTGCTCTTCGTT GCAATTTTAGTCATCTCCGCTCCATACCTCCCAGTAAACGCCGCTTTACAGCAGCTGCTACACCACCACCACGTTCACCGCTACTCGAAAAGGTGAAAAT CATTGCTCTTCTCCAATGGAGAGTTGTTAGTGGTAGTTGGCGGCGGAGCAGCTGGAGTGTAGTGTTGTATTTTATTCCTTGCCTTGACGAATATGCCAAT GGAGAATTGTTAGGGGGGGGTGGCGGCGGAGCAGCTGGAGTGTATGGAGCCATAAGAGCCAAGTCTACAGCGCCTCATCTGAATGTTGTAGTTCTGGAGA AAGGAAAATTTCTATCCAAGGTGAAAATATCTGGAGGTGGAAGATGCAACGTCACAAACGGGCACTGTCCAGACAACACGATTTTGGCAGAACACTACCC TAGAGGTCATAGAGAACTAAGAGGGTCTTTCTTCTTCGCTCATGGACCGCAAGACACAATGTCATGGTTTTCCGATCATGGGGTGCCACTCAAGGTTGAG GAAGATGGACGAGTGTTTCCTGTGACCAACAATTCATCCTCAATAGTTGATTGTCTTCTGTCTGAGGCAAGAGATATAGGAGTTTGTCTGCAGACAGGAA AAACTGTAACTAGTGCTTCCGCTGGAGCCCAAGGAAAGTTTGTGGTGAAGGTTGAAAAAAGGACAGTTGATTTTCTCGAATATTTAGAAGCTGACTATTT AATGATTGCAAGTGGGAGCAGCCGTCAGGGCTATGATATCGCAGTTCAGCTTGGTCATTCGATTATAGATGGTGTCCCAAGCTTATTCACTTTCAAGATT AAGGATCCACTGCTGTCAGAGTTGTCAGGGGTCACGTTTCTTAAGGTAGAAGCAACATTGAAACTGGAAAGTGACAAGAAGAACATCCCACACCTTACGC AGGCATGTCCAATGCTAGTTACACACTGGGGACTCAGTGGCCCTGTAATACTTCGACTATCAGCATGGGGGGCTCGGGATCTGTTCAAAGTAGGCTACAA AGCTTTTCTTATGGTCGATTTTGTACCGGATTTGCACATTGAGGACATGAAGTCAATTCTTAGTCAACAAAAGCAAAAGTTTGTGAAGCAAAAATTGATC AATTCTTGCCCATCAGAATTTGGGATTGTGAAGAGGTTTTGGAAGTATATACTGGATCGTGAGGGTTTAAATTGTGATACCTTGTGGGCTTCTGTATCAA ATAACTCCTTAAATGCTGTTGCTTATCTGTTGAAGAATTGCACATTTGAAGTCGTAGGGAAGATATCTCTGAAAACAATGGAAAGCAAGATACGCTCAAA CCTCTTCTTTGCCGGAGAGGTACTTAACGTGGACGGGGTGACTGGTGGTTTTAATTTTCAGAATGCATGGTCGGGTGGTTACATTGCCGGAACAACGATA GGGGAAGTGGCAGCTAAAGCCAATTGA
AA sequence Show only first row Show all	>Lus10015345 pacid=23160879 polypeptide=Lus10015345 locus=Lus10015345.g ID=Lus10015345.BGIv1.0 annot-version=v1.0 MSLKSSLATFFLQFGILPPCASYSTTSSRAALRCNFSHLRSIPPSKRRFTAAATPPPRSPLLEKVKIIALLQWRVVSGSWRRSSWSVVLYFIPCLDEYAN GELLGGGGGGAAGVYGAIRAKSTAPHLNVVVLEKGKFLSKVKISGGGRCNVTNGHCPDNTILAEHYPRGHRELRGSFFFAHGPQDTMSWFSDHGVPLKVE EDGRVFPVTNNSSSIVDCLLSEARDIGVCLQTGKTVTSASAGAQGKFVVKVEKRTVDFLEYLEADYLMIASGSSRQGYDIAVQLGHSIIDGVPSLFTFKI KDPLLSELSGVTFLKVEATLKLESDKKNIPHLTQACPMLVTHWGLSGPVILRLSAWGARDLFKVGYKAFLMVDFVPDLHIEDMKSILSQQKQKFVKQKLI NSCPSEFGIVKRFWKYILDREGLNCDTLWASVSNNSLNAVAYLLKNCTFEVVGKISLKTMESKIRSNLFFAGEVLNVDGVTGGFNFQNAWSGGYIAGTTI GEVAAKAN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10015345 [exp]	0	1
AT3G10350			P-loop containing nucleoside t...		Lus10038715 [exp]	1.4	0.8647
AT2G25870			haloacid dehalogenase-like hyd...		Lus10038133 [exp]	5.7	0.8324
AT4G17740			Peptidase S41 family protein (...		Lus10004402 [exp]	10.2	0.8064
AT1G73090			unknown protein		Lus10037331 [exp]	11.2	0.7890
AT3G19340			Protein of unknown function (D...		Lus10041512 [exp]	12.0	0.7863
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10012931 [exp]	12.8	0.8272
AT4G04880			adenosine/AMP deaminase family...		Lus10020056 [exp]	14.7	0.7929
AT5G49840			ATP-dependent Clp protease (.1...		Lus10010691 [exp]	15.4	0.7755
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10013548 [exp]	16.0	0.7786
AT5G46390			Peptidase S41 family protein (...		Lus10004601 [exp]	16.2	0.7951

Compare expression of checked genes

Lus10015345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.