Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28630 289 / 2e-96 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) AT1G59710 255 / 2e-83 Protein of unknown function (DUF569) (.1) AT3G01311 254 / 4e-83 Protein of unknown function (DUF569) (.1) AT1G27100 252 / 1e-79 Actin cross-linking protein (.1) AT1G69890 235 / 6e-76 Protein of unknown function (DUF569) (.1) AT1G69900 168 / 1e-48 Actin cross-linking protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001124 [exp] 494 / 2e-176 AT3G28630 313 / 1e-105 Protein of unknown function (DUF569) (.1), Protein of unknown function (DUF569) (.2) Lus10030804 [exp] 277 / 5e-92 AT1G59710 357 / 2e-124 Protein of unknown function (DUF569) (.1) Lus10036694 [exp] 258 / 2e-84 AT1G59710 343 / 5e-119 Protein of unknown function (DUF569) (.1) Lus10013281 [exp] 178 / 2e-54 AT1G59710 240 / 2e-79 Protein of unknown function (DUF569) (.1) Lus10036693 [exp] 171 / 3e-52 AT1G27100 180 / 2e-54 Actin cross-linking protein (.1) Lus10037230 [exp] 172 / 8e-50 AT1G27100 181 / 3e-54 Actin cross-linking protein (.1) Lus10037231 [exp] 121 / 1e-31 AT1G27100 192 / 2e-57 Actin cross-linking protein (.1) Lus10036692 [exp] 48 / 3e-07 AT1G27100 49 / 2e-08 Actin cross-linking protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G075900 [exp] 294 / 2e-96 AT1G27100 431 / 1e-147 Actin cross-linking protein (.1) Potri.004G130200 [exp] 287 / 2e-93 AT1G27100 421 / 2e-143 Actin cross-linking protein (.1) Potri.010G035100 [exp] 284 / 7e-92 AT1G27100 541 / 0.0 Actin cross-linking protein (.1) Potri.008G193900 [exp] 277 / 3e-89 AT1G27100 494 / 2e-171 Actin cross-linking protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [flax] [poplar] Trefoil PF04601 [flax] [poplar] DUF569 Domain of unknown function (DUF569)
Representative CDS sequence Show only first row Show all	>Lus10015346 pacid=23160945 polypeptide=Lus10015346 locus=Lus10015346.g ID=Lus10015346.BGIv1.0 annot-version=v1.0 ATGATGGAACTATTCGAGAAAGCGAGGCTGATACGGCTGCGAAGCCACCACGACAAATACCTGCTGGCTGACGACGACCAAGAAGGCGTGAGCCAAGATC GGAACGGAATGTCAAGGAATGCCAGATGGACGGTGGAGATTGTGGAAGGGTACCAGGCCATACGGTTGCAGAGCTGCTACAGCAAGTATCTTACAGCATC CTCCACGCCTTTCTTGCTAGGAATGACTGGGAAGAAGGTGATCCAGACGTCTCCTTCAAGGCTGGATTCCTCCCTTGATTGGGAACCCATCAGAGAAGGA GTTCAGGTTCGTCTCAAGACCCGCCACGGCCAATACCTTCGAGCTAATGGTGGCGTACCTCCTTGGAGGAATCATGTCACTCATGACATTCCTCACAGAA CAGCCACCCAGGATTGGATTCTCTGGGATGTTGATATTTTAGATTACATCAAACCACCACAACATTGTCCGGGCGAACACGGTGGGCGATCTTTTAAGGC CTCCCTCCACCCTCCTCCTTCGCTTTCTTCTTCTACTATGGAACCTAACCTGTCAAAAAGAAGACAGCCAGAGGTCGTTGGCTTCTTGAAAGAATTTATT AATTATATATATAGTTTGATCAAAATGAAAGGAGGTGATGATTCGTTTGTGATGCCGGCGAAAAATGAAGGGAGGGTTATAACGTACGTAGTAGCAAATA AGAAAGGTGAAGTTGAGGAAGATGATCAAGGAAGTAGCTTTACCTTCAAGGGAAGCCTTGTAGATGAGTTGAAGGAAAGGTTGGAGGAAGAGACAGGGAT GAATGACATGCTTGTATGTTCTCAAAATCCTTTCAATGGAATGCTCAATCCTCTCACCTTGCATCTTCCTCCAAACAACGCCAATATGCACGTCGTTCTA GTTCCATTTGCTGGAAAAGGTTACTTAGCTTCTTCTATCAACTCTCCATGTTTAATTTGCTTTCTCTCATCCATGCATCTTCTAATCACACTATATATGG AACATTTTCCAGAGGCGAAGAACATTTTGCGCCCCACAACAAGTCCCCCTGAAGATTGA
AA sequence Show only first row Show all	>Lus10015346 pacid=23160945 polypeptide=Lus10015346 locus=Lus10015346.g ID=Lus10015346.BGIv1.0 annot-version=v1.0 MMELFEKARLIRLRSHHDKYLLADDDQEGVSQDRNGMSRNARWTVEIVEGYQAIRLQSCYSKYLTASSTPFLLGMTGKKVIQTSPSRLDSSLDWEPIREG VQVRLKTRHGQYLRANGGVPPWRNHVTHDIPHRTATQDWILWDVDILDYIKPPQHCPGEHGGRSFKASLHPPPSLSSSTMEPNLSKRRQPEVVGFLKEFI NYIYSLIKMKGGDDSFVMPAKNEGRVITYVVANKKGEVEEDDQGSSFTFKGSLVDELKERLEEETGMNDMLVCSQNPFNGMLNPLTLHLPPNNANMHVVL VPFAGKGYLASSINSPCLICFLSSMHLLITLYMEHFPEAKNILRPTTSPPED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28630			Protein of unknown function (D...		Lus10015346 [exp]	0	1
AT5G60550		ATSNAK1, GRIK2	geminivirus rep interacting ki...		Lus10037414 [exp]	1.7	0.9078
					Lus10007750 [exp]	2.0	0.9061
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10033076 [exp]	3.3	0.9146
					Lus10021668 [exp]	4.5	0.8805
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10027354 [exp]	4.6	0.8796
					Lus10040954 [exp]	6.3	0.9144
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10018289 [exp]	9.2	0.9000
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Lus10034601 [exp]	10.1	0.8996
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Lus10007867 [exp]	11.8	0.8371
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10013581 [exp]	14.4	0.8919

Compare expression of checked genes

Lus10015346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.