Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16760 368 / 1e-127 Calcium-dependent phosphotriesterase superfamily protein (.1) AT2G47370 337 / 2e-115 Calcium-dependent phosphotriesterase superfamily protein (.1) AT5G28660 134 / 2e-38 NHL domain-containing protein (.1) AT2G01410 106 / 8e-26 NHL domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001126 [exp] 595 / 0 AT4G18905 427 / 5e-142 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10031811 [exp] 99 / 6e-23 AT2G01410 452 / 3e-159 NHL domain-containing protein (.1) Lus10031240 [exp] 98 / 7e-23 AT2G01410 458 / 1e-161 NHL domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G120300 [exp] 408 / 3e-143 AT2G16760 393 / 1e-137 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.006G111600 [exp] 110 / 3e-27 AT2G01410 375 / 5e-129 NHL domain-containing protein (.1) Potri.001G156300 [exp] 103 / 8e-25 AT2G01410 431 / 3e-151 NHL domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015347 pacid=23160954 polypeptide=Lus10015347 locus=Lus10015347.g ID=Lus10015347.BGIv1.0 annot-version=v1.0 ATGGCAATCTGTAGTATCTGCTCCCTGAAATCAATCCTTATCCTCCTCTTACTCTCCGCCGTCCCAATCGGATACCTAATCTCCCTCGAAATCTCACCCC CTTCCACCCACGTCTTCCACTACCACAGCACCGGCGGGTTTCTCCGGGAGTGGTGCGCCAAGTGGGACCCCTCTGCCAACCGATTCATCGTCTCTTACTT CGAAGGAGGTCTCGGCGAGGTTCGCGTTCCGGCCGACTACTCCCCTGGCGACGTATTGGAAGAAGCCACCCTCGTCAAGGACGCCGACGTCGCAGGAAAC GCCTCATTGGGGTTGGTGGTTGACCGTCCGAGGAATCGGGTGCTGGTGGCCGTTGCCGATGTTTTGGGGAACAGCTACAGCGCCTTGGCTGCCTATGACA TCTCCACCCTGAAGCGTCTGTTTCTCACTCAACTCAGCGGCCCCGAGGACGGCAAAACCTTTGCTGACGACGTGGCAGTGGACCCAGAGGGCAATGCTTA CGTGACAGACGTGGCAGGCAACAAAATTTGGAAAGTAGGGAAACAAGGCCACCTCATTTCCACCATCACTGACCCGCTCTTCACCCCAAAGCAATGGTAC AAAACCCTGGTTGGACTCAACGGGATCGTCTACCACCCTCAAGGCTTCTTGATCGTCATCCACACTTTCACGGGCAACTTGTTTAAGATCAGGGTTTCCG GCCCCGGCCAAGAAGATGATCATCAGGTGACCAGCATTGCGGTTCAAGGGTCGCTCGCACTTGGAGACGGTATAGAGCTGATGTCCCCTACTAAGCTGGT GGTGGCTGGTTCCACTCGGTCTGCGAGGTTGGTGGAGAGCTCTGATGGATGGGAGACTGCCACCGTGGTGGGTATCTTCAAAGGGCCTTTGCATCGAATG GCCACGGCTGCTACTGTGAAAGATGGCGATGTGTATCTAAGTCACATGTTTGGTATTGGTTACCCTAGCAAGAAGCATGCTCTTGTTCAAGCTGCTTTCT CTGCTCCTTGA
AA sequence Show only first row Show all	>Lus10015347 pacid=23160954 polypeptide=Lus10015347 locus=Lus10015347.g ID=Lus10015347.BGIv1.0 annot-version=v1.0 MAICSICSLKSILILLLLSAVPIGYLISLEISPPSTHVFHYHSTGGFLREWCAKWDPSANRFIVSYFEGGLGEVRVPADYSPGDVLEEATLVKDADVAGN ASLGLVVDRPRNRVLVAVADVLGNSYSALAAYDISTLKRLFLTQLSGPEDGKTFADDVAVDPEGNAYVTDVAGNKIWKVGKQGHLISTITDPLFTPKQWY KTLVGLNGIVYHPQGFLIVIHTFTGNLFKIRVSGPGQEDDHQVTSIAVQGSLALGDGIELMSPTKLVVAGSTRSARLVESSDGWETATVVGIFKGPLHRM ATAATVKDGDVYLSHMFGIGYPSKKHALVQAAFSAP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16760			Calcium-dependent phosphotries...		Lus10015347 [exp]	0	1
AT5G62580			ARM repeat superfamily protein...		Lus10033129 [exp]	1.4	0.8066
AT1G61930			Protein of unknown function, D...		Lus10002073 [exp]	7.7	0.7885
AT4G02090			unknown protein		Lus10010014 [exp]	8.4	0.8035
AT4G38690			PLC-like phosphodiesterases su...		Lus10034483 [exp]	10.7	0.7600
AT3G24535			unknown protein		Lus10023639 [exp]	13.6	0.7820
AT5G57240		ORP4C	OSBP(oxysterol binding protein...		Lus10040586 [exp]	17.0	0.7504
AT1G30440			Phototropic-responsive NPH3 fa...		Lus10023274 [exp]	19.3	0.7313
AT5G14890			NHL domain-containing protein ...		Lus10033413 [exp]	24.2	0.7574
AT2G30590	WRKY	WRKY21	WRKY DNA-binding protein 21 (....		Lus10018776 [exp]	37.8	0.7200
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10003611 [exp]	38.4	0.7459

Compare expression of checked genes

Lus10015347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.