Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18905 516 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G18900 435 / 1e-149 Transducin/WD40 repeat-like superfamily protein (.1) AT4G35370 424 / 6e-146 Transducin/WD40 repeat-like superfamily protein (.1) AT2G32950 70 / 2e-12 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT5G58230 66 / 1e-11 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT4G35050 64 / 1e-10 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT2G46340 64 / 2e-10 SPA1 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) AT4G11110 64 / 2e-10 SPA2 SPA1-related 2 (.1) AT1G29260 59 / 2e-09 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT3G15354 59 / 6e-09 SPA3 SPA1-related 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001126 [exp] 588 / 0 AT4G18905 427 / 5e-142 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10004613 [exp] 359 / 1e-120 AT4G35370 384 / 1e-130 Transducin/WD40 repeat-like superfamily protein (.1) Lus10004536 [exp] 164 / 7e-48 AT4G18905 194 / 2e-60 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10035332 [exp] 67 / 1e-11 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10029990 [exp] 67 / 1e-11 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10008356 [exp] 62 / 2e-10 AT5G56130 583 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10033459 [exp] 62 / 4e-10 AT5G58230 723 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10027848 [exp] 62 / 4e-10 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10020917 [exp] 62 / 5e-10 AT5G58230 696 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G019833 [exp] 605 / 0 AT4G18905 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G019601 [exp] 603 / 0 AT4G18905 566 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.014G159300 [exp] 70 / 2e-12 AT2G32950 1091 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G021700 [exp] 69 / 3e-12 AT2G32950 686 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G002700 [exp] 68 / 7e-12 AT2G32950 832 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G179700 [exp] 67 / 8e-12 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G216200 [exp] 65 / 3e-11 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G137100 [exp] 64 / 2e-10 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.001G094500 [exp] 64 / 2e-10 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.004G057600 [exp] 62 / 2e-10 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10015348 pacid=23160878 polypeptide=Lus10015348 locus=Lus10015348.g ID=Lus10015348.BGIv1.0 annot-version=v1.0 ATGATACCGGCACTTTCATGGTTGCCGAAAGGGGCGGCGAAATCCGTCCCTGAAGTGGCAGAACTACCTTCCAAACAAGAGATCGAAGAGCTGTTGAAGT CTGGTGATGTAGAAGAAGAAGAAGAAAGTGGAGGAAGTGGGAATGAATCGGAGGATGATGGAAATATGGATGTGGAGGCCGAGATGCAATCTAACGGAGT CGGTCAAGCACTAGCTGTAGCAGACGCACTTGGCAGAAAAACGAAAACCAACAACCTAGATGCTGCCTTGGAGGAGCTTCACTTGGAAGGTTATGATGAC GAGGATGAAGACGTCGAGATTTTCAGCTCTGGACTTGGGGGAGTTTATTATCCCGATAACAAAATGGACCCTAATCTCAAGGATAAAGATGATGATGACT CTGAAGAGGAAGAGGATATGACTATTAAATCAACAGATGCAGTAATAGTTTGTGCACGTACCGAAGAAGAACTCAGCCATCTCGAGGCAAATTCTGATGG TGGTGACCCAAATATGTACATTCACCATGATATTATCCTTTCAGCGTTTCCTTTGTGTGTAGCATGGCTTGATTGCCCAATTAAAGGAGGGGAAAAAGGG AATTTTATTGCTGTTGGTTCAATGGAACCTACTATTGAACTATGGGATCTTGACATAATTGAGGAAGTACAACCATCTGCAGTGTTAGGCGGTGTTGTTG CTGAGGAGAATAAGAAGAAGAAGAAAAAGAAAGGAAAGGCCTCAATAAAGTACAAAGAAGGAAGTCACACTGATTCTGTACTTGGACTCGCTTGGAACAA GCAGTTTAGGAATGTCCTTGCCAGTGCCAGTGCTGACAAACAAGTTAAAATATGGGATGTTGCTACTGAAAAATGTAGTATTACGATGGAGCATCATACA GACAAGGTGCAAGCAGTTGCATGGAATCACCACGATCCACAAATTCTTCTTAGTGGATCTTTTGATCGATCAGTTGTAATGAAAGATGGTAGGAACCCTT CACACCCAGGAATAAGATGGTCGGTTACAGCTGATGTGGAAAGCTTGGCATGGGATCCACACAGTAGACACAACTTTGTGGTGAGTCTTGCAGATGGTAT GGTCCAAGGTTTTGATATCCGTACTGCAACATCTGCTGCAAGTTGTGATTTGAAGCCAAGTTACACAATCCATGCACATGACAAAGAAGTGTGCACAATT GCCTATAATCCTTGTGTTCCTAATCTTCTTGCAACTGGATCAACGGATAAAATGGTAAAAGTTTGGGATTTATCTAAGAACCAACCTTCATGTGTTGCAT CTAACAATCCGAAAGCGGGAGCTGTATTCTCGATTTGCTTCTCAGTGGATAACCCATTTCTGATGGCAATCGGAGGTTCGAAGGGAAATTTAGAAGTGAG TATAGATAGTGTTGTTTATTTGTTTGTTCCGTGTCTGTGTACAAAGTGA
AA sequence Show only first row Show all	>Lus10015348 pacid=23160878 polypeptide=Lus10015348 locus=Lus10015348.g ID=Lus10015348.BGIv1.0 annot-version=v1.0 MIPALSWLPKGAAKSVPEVAELPSKQEIEELLKSGDVEEEEESGGSGNESEDDGNMDVEAEMQSNGVGQALAVADALGRKTKTNNLDAALEELHLEGYDD EDEDVEIFSSGLGGVYYPDNKMDPNLKDKDDDDSEEEEDMTIKSTDAVIVCARTEEELSHLEANSDGGDPNMYIHHDIILSAFPLCVAWLDCPIKGGEKG NFIAVGSMEPTIELWDLDIIEEVQPSAVLGGVVAEENKKKKKKKGKASIKYKEGSHTDSVLGLAWNKQFRNVLASASADKQVKIWDVATEKCSITMEHHT DKVQAVAWNHHDPQILLSGSFDRSVVMKDGRNPSHPGIRWSVTADVESLAWDPHSRHNFVVSLADGMVQGFDIRTATSAASCDLKPSYTIHAHDKEVCTI AYNPCVPNLLATGSTDKMVKVWDLSKNQPSCVASNNPKAGAVFSICFSVDNPFLMAIGGSKGNLEVSIDSVVYLFVPCLCTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18905			Transducin/WD40 repeat-like su...		Lus10015348 [exp]	0	1
AT1G25260			Ribosomal protein L10 family p...		Lus10030073 [exp]	5.8	0.8360
AT3G23390			Zinc-binding ribosomal protein...		Lus10040983 [exp]	6.3	0.8362
AT4G08460			Protein of unknown function (D...		Lus10009772 [exp]	8.5	0.8194
AT3G53740			Ribosomal protein L36e family ...		Lus10016501 [exp]	8.7	0.8357
AT4G36420			Ribosomal protein L12 family p...		Lus10028336 [exp]	10.2	0.7623
AT5G60340			P-loop containing nucleoside t...		Lus10016525 [exp]	14.0	0.7729
AT1G16000			unknown protein		Lus10011478 [exp]	16.3	0.7680
AT2G31410			unknown protein		Lus10031995 [exp]	16.7	0.7834
AT1G53850		PAE1, ATPAE1	ARABIDOPSIS 20S PROTEASOME ALP...		Lus10003936 [exp]	17.0	0.7931
AT3G06610			DNA-binding enhancer protein-r...		Lus10037773 [exp]	17.7	0.8030

Compare expression of checked genes

Lus10015348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.