Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18880 659 / 0 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT5G62680 649 / 0 Major facilitator superfamily protein (.1) AT3G47960 644 / 0 Major facilitator superfamily protein (.1) AT1G69870 503 / 3e-172 NRT1.7 nitrate transporter 1.7 (.1) AT1G27080 438 / 1e-147 NRT1.6 nitrate transporter 1.6 (.1) AT1G68570 411 / 7e-137 Major facilitator superfamily protein (.1) AT5G28470 407 / 1e-135 Major facilitator superfamily protein (.1) AT5G01180 400 / 7e-133 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT1G69860 395 / 3e-131 Major facilitator superfamily protein (.1) AT1G52190 396 / 6e-131 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036669 [exp] 699 / 0 AT5G62680 758 / 0.0 Major facilitator superfamily protein (.1) Lus10033106 [exp] 677 / 0 AT5G62680 761 / 0.0 Major facilitator superfamily protein (.1) Lus10037221 [exp] 487 / 5e-166 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10036705 [exp] 482 / 8e-164 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10024345 [exp] 429 / 1e-143 AT5G28470 634 / 0.0 Major facilitator superfamily protein (.1) Lus10042182 [exp] 428 / 4e-143 AT5G28470 620 / 0.0 Major facilitator superfamily protein (.1) Lus10018207 [exp] 413 / 8e-136 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10017817 [exp] 409 / 2e-135 AT1G68570 637 / 0.0 Major facilitator superfamily protein (.1) Lus10011055 [exp] 399 / 4e-132 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G351200 [exp] 812 / 0 AT5G62680 677 / 0.0 Major facilitator superfamily protein (.1) Potri.017G076800 [exp] 785 / 0 AT3G47960 680 / 0.0 Major facilitator superfamily protein (.1) Potri.012G071500 [exp] 741 / 0 AT5G62680 779 / 0.0 Major facilitator superfamily protein (.1) Potri.012G071400 [exp] 736 / 0 AT5G62680 689 / 0.0 Major facilitator superfamily protein (.1) Potri.010G034700 [exp] 519 / 5e-179 AT1G69870 702 / 0.0 nitrate transporter 1.7 (.1) Potri.006G091600 [exp] 437 / 7e-147 AT5G28470 539 / 0.0 Major facilitator superfamily protein (.1) Potri.009G042400 [exp] 425 / 1e-142 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G103200 [exp] 423 / 2e-141 AT5G28470 534 / 0.0 Major facilitator superfamily protein (.1) Potri.001G248600 [exp] 421 / 5e-141 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G126300 [exp] 414 / 2e-138 AT1G68570 901 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10015351 pacid=23160882 polypeptide=Lus10015351 locus=Lus10015351.g ID=Lus10015351.BGIv1.0 annot-version=v1.0 ATGGAGGAGAGGAGGAAGGAGGATGAGGATGAGCATGAGGAAACTGCAGTAGTTAACTACAGAGGAATTAAAGCTATGCCATACATCATCGGGAATGAGA CGTTTGAGAAGCTGGGGACTGTGGGCTCAGCTTCAAACCTGATAGTGTACTTGACCACCGTGTTCAACATGAGCAGTGTCTCGGCCACCACTCTCATCAG CGTCTTCAATGGAACTTGCAACTTGGCCACTTTGCTCGGAGCTTTCCTTTGCGATACTTACTTTGGGAGATACAACTGCTTGGCTTTTGCTTCTGTTTCC TCTTTCTTGGGAATGCTAATTTTAATGCTGACAGCAGCGATTCACAGCTTACACCCGCCACAATGTCCATCAGGAGAAACTGATTGTACAAGGGCAACTG CAGGGCAATTCATCTTCCTACTAAGCTCTTTTGTATTCCTCGTCATCGGCGCCGGTGGGATTCGTCCTTGCAACTTAACCTTTGGAGCCGACCAATTCAA TCCCAGTACTGAATCCGGTAGAAAAGGAACCAACAGCTTCTTCAACTGGTACTACTTCACCTACACATTTGCGGTCATGGTCTCTGTCACCGGCATTGTC TATGTCCAATCTGATGTCAGCTGGGCCATCGGCCTTGGGATTCCTGCTTTCTTAATGTTCCTCTCTTGCGCCGTCTTCTTCTGGGGAACCTCTATTTACG TCTTGGTCAAACCTCAAGGTAGCCCCATGACCAGTGTGTTCCAGGTCCTTGTCGCTGCTTCAAGAAAGAAGAGGCTCCAACTCCCTCCAAATCCTGACCA TTCTCTCTTCAACTACTTGCCACCTAAATCCCTCAATTCCAAGCTATCTCACACACATCAATTCAGGTGTCTTGACAAGGCAGCAATCAGTACAGAGCAA GACGAGTACAAACCTGATGGCTCTCCAAAACAGCCATGGAGGCTCTGCAGCGTACAACAAGTTGAGGAAGTCAAATGCATAGTTAGGATCCTCCCAATTT GGTCAACAGCCATTCTATTCCACATTGCCATAATGCAGCAACAAACTTACGGAATTTTCCAAGCCTTGCAATCCGACAGGCGCCTAGGAAATGGAGGCTT CAGGGTTCCTGCAGCCACCTACATCATCTTCACAATGCTGGCCCTCACCTTCTGGATTCCAATCTACGACAGGATCATCGTCCCTTATCTCGAAAAGATC ACAAGGAAAGAAGGTGGGATCACTCTACTTCAAAGGATGGGGGTGGGACTTGTTCTCGGAATCCTTTGTATGGTGACGTCAGGATTGGTTGAAGAGTACA GGAAACACATTGCAGAGACGAAGCCCGGAATCGGGATTGCTCCGAAAGGTGGGGACGTCTCGGCAATGTCGAGCATGTGGCTAGTCCCGCAACTTGTGCT CACGGGATTAGCGGAAGGGTTCAACTACATCGCTCAGATTGAGTTCTTTTACAAGCAGTTTCCGGAGAGCATGAGGAGCATTGCGCAAGCATTTTTCTTT GCAGGGAATGCACTGTCAAGTTACCTGAGCGGATTCCTGGTGTCTGTAGTCCATCAAATCACAAGTAGGGGTGATAACAGTGATGACTGGTTGCCTGATG ATTTGAATAAGGGCAAACTGGACTACTTCTATTTCATGTTGGCTGGACTTGGGATTCTTAATTTGGGCTACTTTTTCATGTGTGCTCAATGGTACGTGTA TAAAGAGGATCTTAAGAGCACAGGGGATGGTCAGATTCAACTTCCTGGGAAGGAACCTAAGAAGAATATGCATCTTGCTGTCTAG
AA sequence Show only first row Show all	>Lus10015351 pacid=23160882 polypeptide=Lus10015351 locus=Lus10015351.g ID=Lus10015351.BGIv1.0 annot-version=v1.0 MEERRKEDEDEHEETAVVNYRGIKAMPYIIGNETFEKLGTVGSASNLIVYLTTVFNMSSVSATTLISVFNGTCNLATLLGAFLCDTYFGRYNCLAFASVS SFLGMLILMLTAAIHSLHPPQCPSGETDCTRATAGQFIFLLSSFVFLVIGAGGIRPCNLTFGADQFNPSTESGRKGTNSFFNWYYFTYTFAVMVSVTGIV YVQSDVSWAIGLGIPAFLMFLSCAVFFWGTSIYVLVKPQGSPMTSVFQVLVAASRKKRLQLPPNPDHSLFNYLPPKSLNSKLSHTHQFRCLDKAAISTEQ DEYKPDGSPKQPWRLCSVQQVEEVKCIVRILPIWSTAILFHIAIMQQQTYGIFQALQSDRRLGNGGFRVPAATYIIFTMLALTFWIPIYDRIIVPYLEKI TRKEGGITLLQRMGVGLVLGILCMVTSGLVEEYRKHIAETKPGIGIAPKGGDVSAMSSMWLVPQLVLTGLAEGFNYIAQIEFFYKQFPESMRSIAQAFFF AGNALSSYLSGFLVSVVHQITSRGDNSDDWLPDDLNKGKLDYFYFMLAGLGILNLGYFFMCAQWYVYKEDLKSTGDGQIQLPGKEPKKNMHLAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18880		NRT1.9	nitrate transporter 1.9, Major...		Lus10015351 [exp]	0	1
AT1G31130			unknown protein		Lus10018940 [exp]	6.6	0.7573
					Lus10021794 [exp]	7.3	0.6915
AT4G12010			Disease resistance protein (TI...		Lus10018021 [exp]	8.7	0.7445
AT5G14740		BETACA2, CA18, ...	CARBONIC ANHYDRASE 18, BETA CA...		Lus10016443 [exp]	9.6	0.7383
AT1G27040			Major facilitator superfamily ...		Lus10032876 [exp]	11.2	0.7180
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10033192 [exp]	19.7	0.7429
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10019543 [exp]	25.7	0.6785
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10015988 [exp]	28.9	0.7081
AT4G27290			S-locus lectin protein kinase ...		Lus10038557 [exp]	28.9	0.6509
AT1G07120			unknown protein		Lus10031293 [exp]	30.1	0.7344

Compare expression of checked genes

Lus10015351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.